Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 183 / 1e-54 HXXXD-type acyl-transferase family protein (.1) AT4G29250 52 / 3e-07 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000592 [exp] 659 / 0 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040156 [exp] 326 / 2e-109 AT5G02890 213 / 6e-66 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 315 / 2e-105 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 53 / 2e-07 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 44 / 0.0001 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082100 [exp] 233 / 8e-74 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) Potri.001G152500 [exp] 228 / 1e-71 AT5G02890 211 / 4e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 49 / 5e-06 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10011003 pacid=23148667 polypeptide=Lus10011003 locus=Lus10011003.g ID=Lus10011003.BGIv1.0 annot-version=v1.0 ATGACGAAAACAACCCCCGTCCCAAAGCCACGACTAGAAGGGATCCAAACGGTTCCCCCATCTATGGTGACCGAGCCAAGGAGGACACGCCACGTGTCCC TAGACGATGGGGGAGAGCTCTTGAAAGGGTGCTTGAACGTTGTCCTGTTCTACAACAAAGCGGTGGGGCCAGGGGATCAGGGTTCTGGCTGGGTGGTGGC TGGGTGGATGAAGGACTCGTTGGCGCGGGCCATGAACGAGCAACCTTTGTTGAGCGGAAGGGTTGTGTGTAGTAAGGGAGACGCGTTGGAGATCGTGTCG AACGATAGCGGGGCTCGATTGATCGAGGCGACGATCCCGGTGAGTGTGAAGGAGTTCATGGAGATGGAGGATGGGGTGAGGGGTGAGGCTGAGGCTGAGT TGGTTCTTTGGAAGGAGCTTGATGAGATGAGTCCTCAGTTTTCTCCTCTTCTCTATGTACAGGTAACGAATTTCAGCTGCGGAGGCTACTCGATTGGAAT CAGTTGTAGCCTTCTTCTCGCAGATATTCTGCTAACCAACAACTTCTTCCAAAAATGGGGCAAGATCCAGCGACAAATAATCATTTCCAACTCATCCTTG GCTAACATCCCGACATTTTACCTCCCAAACCTGAAACCCAACGGCTCGTTTACCCTTGAAGCGTTTGATTCAACTCCAACCAGAGGCAAGTCACACTCTA TGTTCTTCAAAACCAAACAACACGATACATCATCCCATTTGGCCAACGTATGCGCACAAAAAGCACGACATGTTTTAGGCAACGGTGCAACTGCAGTTTC GAGCTTTCGTCTGGTTTCGGTGTCGGAGGAGGATGAGGTCTTGAGGGTGAAGAAATGGAAGACAAGTGAAGAGGGAAATGGTAAAGGGAAAGAGATGGTG GTGGGGAATGCTAGTTGGGAGGATTTGGGGATTGGTGAGGTTTCCTTTTACCAAGGGAACAAGCCTATTGGTTTCGGTTGTTGGGTTGGGTGGGAAGACG ATGAAACCGGATTGGTTATGACTATCAACGATAATAAGAAAAACGATGGTGTCATCGTCGTTGTTGCTATTCCCGGCAGTGAGAAGATTCGACATTCGTA G
AA sequence Show only first row Show all	>Lus10011003 pacid=23148667 polypeptide=Lus10011003 locus=Lus10011003.g ID=Lus10011003.BGIv1.0 annot-version=v1.0 MTKTTPVPKPRLEGIQTVPPSMVTEPRRTRHVSLDDGGELLKGCLNVVLFYNKAVGPGDQGSGWVVAGWMKDSLARAMNEQPLLSGRVVCSKGDALEIVS NDSGARLIEATIPVSVKEFMEMEDGVRGEAEAELVLWKELDEMSPQFSPLLYVQVTNFSCGGYSIGISCSLLLADILLTNNFFQKWGKIQRQIIISNSSL ANIPTFYLPNLKPNGSFTLEAFDSTPTRGKSHSMFFKTKQHDTSSHLANVCAQKARHVLGNGATAVSSFRLVSVSEEDEVLRVKKWKTSEEGNGKGKEMV VGNASWEDLGIGEVSFYQGNKPIGFGCWVGWEDDETGLVMTINDNKKNDGVIVVVAIPGSEKIRHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	1.0	0.9685
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	2.0	0.9245
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10041361 [exp]	2.0	0.8996
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	7.4	0.8944
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	9.2	0.8523
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	9.3	0.9092
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	12.4	0.8795
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	13.9	0.8758
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	14.7	0.8849
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	15.3	0.8896

Compare expression of checked genes

Lus10011003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.