Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47180 167 / 1e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT4G00170 84 / 8e-20 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 79 / 4e-18 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 79 / 6e-18 PVA12 plant VAP homolog 12 (.1) AT1G08820 60 / 1e-10 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 52 / 3e-08 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 50 / 6e-08 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000591 [exp] 298 / 1e-103 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10010360 [exp] 94 / 8e-24 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 89 / 1e-21 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10009279 [exp] 91 / 4e-21 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10008512 [exp] 75 / 2e-16 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10000031 [exp] 69 / 2e-15 AT3G60600 143 / 3e-44 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10000032 [exp] 69 / 4e-15 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1) Lus10015885 [exp] 70 / 1e-14 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10028937 [exp] 70 / 5e-14 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082500 [exp] 163 / 6e-51 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 143 / 5e-43 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.014G060900 [exp] 108 / 3e-29 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144800 [exp] 106 / 1e-28 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.002G144000 [exp] 105 / 5e-28 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G076100 [exp] 97 / 7e-25 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 89 / 9e-22 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.005G044900 [exp] 64 / 4e-12 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.013G031400 [exp] 64 / 5e-12 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011004 pacid=23148653 polypeptide=Lus10011004 locus=Lus10011004.g ID=Lus10011004.BGIv1.0 annot-version=v1.0 ATGTCGACGGCCGGCGGCGGCAGTAACCAGCTGATCACCATTCATCCTGACGAGCTCAGGTTTATTTTTACTTTGCAAGCACAAAGAGAAAGTCCACCTG ATATGCAATGCAAGGACAAATTCTTGTTGCTAAGCACAACTGTGCCTCAGCATACTGATGTGGATGAGCTTCCTCCAGATACATTCACTAAGGATAGCAA TGGAAGAATTGTGGAGGAGTGCAAGCTAAGAGTTCTATACATCCCACCCTCAGCTCAAGGGAATGGAGAAGATGATGCCTTAACAAGCCCTAATCAAAGT TTTGATGGCAATTTTAATATGCAGCGTCTGAAGGATGAAAGAGATTCGGCTGTGCGACAGACACAACAACTGCAACAAGAACTAGATTTAATAAAACGTC AAAGCTACCGAAAAATGAGTCCAGGATTCTCTATCAAGTTTGCATTGATTGTGGCACTCATCGGAATTATGCTTGGCTTCTTGATGAAATGGTCGATGTC TTCGTCGGCGGCGGCAGATCTAACGGAAGTTTTAACTCCGTCGGAAGTTGTAACCCCACCGGAAGTATAA
AA sequence Show only first row Show all	>Lus10011004 pacid=23148653 polypeptide=Lus10011004 locus=Lus10011004.g ID=Lus10011004.BGIv1.0 annot-version=v1.0 MSTAGGGSNQLITIHPDELRFIFTLQAQRESPPDMQCKDKFLLLSTTVPQHTDVDELPPDTFTKDSNGRIVEECKLRVLYIPPSAQGNGEDDALTSPNQS FDGNFNMQRLKDERDSAVRQTQQLQQELDLIKRQSYRKMSPGFSIKFALIVALIGIMLGFLMKWSMSSSAAADLTEVLTPSEVVTPPEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	1.4	0.9485
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	2.0	0.9245
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027942 [exp]	6.9	0.8505
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	6.9	0.8805
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	8.8	0.8693
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	9.8	0.8471
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	12.0	0.8598
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	12.4	0.8508
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	12.4	0.8779
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	14.4	0.8481

Compare expression of checked genes

Lus10011004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.