Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23620 328 / 8e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) AT5G66860 147 / 3e-43 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000590 [exp] 496 / 3e-180 AT4G23620 329 / 2e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10009338 [exp] 139 / 4e-40 AT5G66860 297 / 4e-102 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10019634 [exp] 134 / 5e-38 AT5G66860 293 / 8e-101 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097801 [exp] 344 / 2e-120 AT4G23620 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Potri.005G135000 [exp] 143 / 1e-41 AT5G66860 320 / 5e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.007G039700 [exp] 136 / 7e-39 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011005 pacid=23148625 polypeptide=Lus10011005 locus=Lus10011005.g ID=Lus10011005.BGIv1.0 annot-version=v1.0 ATGTACAGACTCCATAGAACCTTAGCATCCACCGCCGGGACCAAACCCCTCCACCGCTTCTTCGCCCAGCTCGCTGTCGCCGCCGAGGAGTCAGCATCAC CCGCAATCAATGAGTCGACACCATTAACGTACCTTGACGGGTTCCCGAAGCCGGCGCCGGCGGAGACGATTCTGGCGATCCCGCGAGCAGATTCCGGGAA GAACATCTCGGCTAAGGAGAGGAAAGCCGGGAGGGTTCCCGGGATCTTATTCGAGCAGGAGAATGGACAGCAAGGCGGGAATAAGCGGCTGGTCTCTGTC CAGGCGAATCGGATAAGGAATATGGTGGATAAGATGGGGAGGTCGTTCTTCTTGTCTAGGCTGTTTGATCTCGAGGTCAGGTCCGCGTTTGATGAGTCCG GCGAGATCGTCGAGAAAGGTCGGGTCTTGCCCAGATTGCTGCATTTGCACTCAGGGAGTGATGCGCCGCTTAATATTACGTTCATAAGGGCGCCATCGGA GGCATTGTTGAAGGTTGATGTTCCTCTTGTGTTCATAGGAGACGATGTGTCGCCTGGACTAAGGAAAGGTTCCTACTTGAACGTGATCAAGAGAACAGTG AAATTCCTGTGCCCAGCAGACATAATCCCACCCTATATCGAGGTCGACCTAAGCGAACTGGACGTCGGCGAGAAGCTCCTAGTCGGGGACCTGATCGTCC ATCCGGCATTGAAGCCGGTGGTGGCGAAAGAGCAGCCGGTTGTGAAGATCCAGGGAGCCCGAGTTTCCGACCAAAAGAAAGCCAAATAA
AA sequence Show only first row Show all	>Lus10011005 pacid=23148625 polypeptide=Lus10011005 locus=Lus10011005.g ID=Lus10011005.BGIv1.0 annot-version=v1.0 MYRLHRTLASTAGTKPLHRFFAQLAVAAEESASPAINESTPLTYLDGFPKPAPAETILAIPRADSGKNISAKERKAGRVPGILFEQENGQQGGNKRLVSV QANRIRNMVDKMGRSFFLSRLFDLEVRSAFDESGEIVEKGRVLPRLLHLHSGSDAPLNITFIRAPSEALLKVDVPLVFIGDDVSPGLRKGSYLNVIKRTV KFLCPADIIPPYIEVDLSELDVGEKLLVGDLIVHPALKPVVAKEQPVVKIQGARVSDQKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	0	1
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	2.0	0.9416
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	3.2	0.9129
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	4.5	0.9024
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10026698 [exp]	5.2	0.9049
AT1G07930			GTP binding Elongation factor ...		Lus10015070 [exp]	5.5	0.8961
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	5.7	0.8744
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	5.7	0.8900
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	6.2	0.8799
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	6.8	0.8583
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	6.9	0.8829

Compare expression of checked genes

Lus10011005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.