Plant FIBer expression Database

Lus10011007 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000588
[exp]
109 / 2e-29 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011007 pacid=23148630 polypeptide=Lus10011007 locus=Lus10011007.g ID=Lus10011007.BGIv1.0 annot-version=v1.0
ATGGACGCCGTTTCACAAGCAACTAAAGCTTCTGATGCGGCCATGTCGACAGGGAACAATAATCTGATGGCTTTGCAACAGCAGATGGACCAGTCGTTTC
TGAACCGCGGGCAGCATCTCGAGGAGCTCGCGAAGGAGATCGAGGCGAAGGCGAAAGCTGCGGCCGAGAAAGTGGCTGCTAATGCTGCCGAGCTGAGGAA
GGTCAGGGGAATCCCCGACGATCCTGTCCCACCACTGGCTTGCTTCGAGAAGCTGACAGAATTAACTCTGTCAGGTACTCGGCACCTTCCGAGCAGCCTG
TCGATCGGAGCATCGACAGAGGTTCTCACCAGCATGGAAGAAACCAAGAGAGGAATCCAGCGGATACAAGAGATGGCCATTCAAGGAACAGAACCAGAAG
TCCGCGGCACAGGAATTGGAGCAGGAACTCAACAAGGACTGCAAAAACAGATGCAGAAGAGTCGAGAGATGGCCATGGAAGTTCTCATCGGCGTGGGAGT
AGGGAAAGGAGTCCACCATTGCACGTCGAAAGCAAAGTGGACGATAATTCAAGTGATAAAACCAGAAGGAGCAAGAGCAAGGAGAGGGGTTCAGGTTACG
GTCAAGATCGAGGAACCCGTGTGTCAAGGAGGAGCAGGGAGAGGAGTCCGGACTACAACAGATGTCGAAGAAGCAGGAGCAGGGAGAGGAGGCGAAGGTC
GAGAAGTAGAGACAGGATGA
AA sequence
>Lus10011007 pacid=23148630 polypeptide=Lus10011007 locus=Lus10011007.g ID=Lus10011007.BGIv1.0 annot-version=v1.0
MDAVSQATKASDAAMSTGNNNLMALQQQMDQSFLNRGQHLEELAKEIEAKAKAAAEKVAANAAELRKVRGIPDDPVPPLACFEKLTELTLSGTRHLPSSL
SIGASTEVLTSMEETKRGIQRIQEMAIQGTEPEVRGTGIGAGTQQGLQKQMQKSREMAMEVLIGVGVGKGVHHCTSKAKWTIIQVIKPEGARARRGVQVT
VKIEEPVCQGGAGRGVRTTTDVEEAGAGRGGEGREVETG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011007
[exp]
0 1
AT3G15150 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METH... Lus10015968
[exp]
1.0 0.9206
AT3G62330 Zinc knuckle (CCHC-type) famil... Lus10010000
[exp]
1.4 0.9102
AT2G43370 RNA-binding (RRM/RBD/RNP motif... Lus10027015
[exp]
3.2 0.8809
AT5G19830 Peptidyl-tRNA hydrolase family... Lus10014589
[exp]
4.0 0.8821
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Lus10028400
[exp]
5.6 0.8536
AT1G55325 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, R... Lus10035972
[exp]
6.7 0.8820
AT5G59440 ATTMPK.2, ATTMP... ZEUS1, ARABIDOPSIS THALIANA TH... Lus10027801
[exp]
8.0 0.8688
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10027928
[exp]
8.5 0.8894
AT5G12230 MED19A unknown protein Lus10002150
[exp]
10.8 0.8984
AT3G51270 protein serine/threonine kinas... Lus10013682
[exp]
14.9 0.8876

Lus10011007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.