Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17570 437 / 4e-149 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT5G47140 350 / 2e-115 GATA GATA27 GATA transcription factor 27 (.1) AT3G45170 58 / 2e-09 GATA GATA14 GATA transcription factor 14 (.1) AT5G66320 54 / 8e-08 GATA GATA5 GATA transcription factor 5 (.1.2) AT2G28340 54 / 1e-07 GATA GATA13 GATA transcription factor 13 (.1) AT4G36240 52 / 2e-07 GATA GATA7 GATA transcription factor 7 (.1) AT3G24050 52 / 5e-07 GATA GATA1 GATA transcription factor 1 (.1) AT4G32890 52 / 7e-07 GATA GATA9 GATA transcription factor 9 (.1) AT3G51080 51 / 7e-07 GATA GATA6 GATA transcription factor 6 (.1) AT1G08010 50 / 2e-06 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000587 [exp] 813 / 0 AT4G17570 394 / 1e-131 GATA transcription factor 26 (.1.2.3) Lus10011010 [exp] 513 / 2e-177 AT4G17570 294 / 3e-92 GATA transcription factor 26 (.1.2.3) Lus10041313 [exp] 56 / 4e-08 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10037398 [exp] 55 / 6e-08 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10041810 [exp] 54 / 8e-08 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10038273 [exp] 54 / 1e-07 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 54 / 2e-07 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10016092 [exp] 52 / 4e-07 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10021466 [exp] 52 / 5e-07 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082800 [exp] 643 / 0 AT4G17570 479 / 4e-165 GATA transcription factor 26 (.1.2.3) Potri.001G151700 [exp] 639 / 0 AT4G17570 485 / 1e-167 GATA transcription factor 26 (.1.2.3) Potri.007G016600 [exp] 55 / 5e-08 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.005G117600 [exp] 53 / 2e-07 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.004G211800 [exp] 53 / 2e-07 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.007G116550 [exp] 52 / 3e-07 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.003G174800 [exp] 52 / 4e-07 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.019G033000 [exp] 52 / 5e-07 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.001G188500 [exp] 51 / 8e-07 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.013G059600 [exp] 51 / 1e-06 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger CL0266 [flax] [poplar] PH PF04683 [flax] [poplar] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Representative CDS sequence Show only first row Show all	>Lus10011008 pacid=23148673 polypeptide=Lus10011008 locus=Lus10011008.g ID=Lus10011008.BGIv1.0 annot-version=v1.0 ATGGGAAAGCAAGGACCTTGCTATCACTGTGGAGTTACAAGCACGCCACTCTGGAGAAACGGACCCCCCGAGAAGCCGGTTCTGTGCAATGCGTGTGGGT CTAGGTGGCGCACGAAGGGAACGCTCGTGAACTACACGCCTCTTCATTCTCGGCCAGACCCTGTCGATTACGAGGATCACCACCATCACCATAGAGTTTC CAGACTGAAGAATATATATGTTAGTAGAAATGAAGAGGTGAGGCTCGTTAAAAGGAAGGCTATTGTCGATGTTGGTGTGGCGGTCGGAGGGTTGGTTCCG GTTCCGGATTACATCCAGAATAGCCGGAAGGTTTTCGATGAAGATGTTAGTAATAGGTCGAGTTCTGGATCGGCCATTTCCAATTCCGAGAGCTGTGCAC AGTTCGGCAGCATCGATGCTAGTGAATTGACAGGCTCTGGTCAAACAGTGGTCTGGGACTCGACGGTGCCATCTCGAAAGAGAACCTGCGTGAACCGTCC GAAACAGTCCTCAGTCGAGAAGCTGACGAAGGATCTCTACACGATATGGCATGAGCAGCAGTCTTCTTGCTTCTCCGGCCTTTCTGAAGAGGATGATTTG CTTTTTGAGAGCGAAACACCAATGGTCTCTGTCGAGATAGGGCATGGTAGTGTCCTCATCAGGCATCCGAGTGCAATAGCTCGTGATGAGGAGTCCGAGG CCAGTTCCCTATCTGTTCACAACAAGAAGTATAGCCATTCGGCTAATGAAGCTTACTCCCCCTCGGTCATCATCAAGACTCCTGGTTCTGCAATCGTAAA ACCTCAGAACCGGCCTGGTCAAGGAATGCAGCAACAAAATCTCAACCGGGACAAGTCTCAACAGGAGAAGGTGCAGGTTCTTGGCAGTCACAAGTCACCT CTGTGTAACATTGATCTGAATTGTGTCATAAATTTTGAGGAGTTTGCGAAACAGTTGACGAACGAAGAGCAGCAGCAGTTACTGAAATATCTGCCTCCAG TCGACTCCGGCAGACTTCCTGAAAGCATCAGAGCCATGTTTGATAGCCCTCAGTTCAAGGAGAACTTGTCTTCCTACCAACAGCTAATGGCAGAAGGGGT CTTTGATCTATCATTCTCTGGAGCCAAGTCTGAAGATTGCAAGACTCTAAAGAGGCTTACGTTATCGAACTTCTCGAAGTCTAAATGGGTGGAGCACTAT AATCTACTCAAGAAATGCAGAAACAATGCAGGGAACTCTCCTGCTGTAAAGGGAAACCACGTGGCTTCGAATTTCTCGAGCTCGAGTCAAAGGATTCCAG AAATGAAGATGATGACTAGAAGCCCTAAGAGGAGTGTTACGTACGTGAACAACGAGCTCACCGAAAATGAGGCATCCTACTTCAGTCCGAAGAGCCTGTT CGCGTTGCCTCCCGAGGGAGGCTTCGAGGACTCTCTCAATTTCGTCGACAACGACGACGAAGGAGACTTACTGCTGGATGTGCCATCCAATGGCTCATTC CCTCAGGCAGAACTGCTGCATCTGAGTAATCTTGGTCAGCAAGCAAGCACTAGCAGTAGCTCGATTCGCCCACTCCGTCCCTGA
AA sequence Show only first row Show all	>Lus10011008 pacid=23148673 polypeptide=Lus10011008 locus=Lus10011008.g ID=Lus10011008.BGIv1.0 annot-version=v1.0 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHSRPDPVDYEDHHHHHRVSRLKNIYVSRNEEVRLVKRKAIVDVGVAVGGLVP VPDYIQNSRKVFDEDVSNRSSSGSAISNSESCAQFGSIDASELTGSGQTVVWDSTVPSRKRTCVNRPKQSSVEKLTKDLYTIWHEQQSSCFSGLSEEDDL LFESETPMVSVEIGHGSVLIRHPSAIARDEESEASSLSVHNKKYSHSANEAYSPSVIIKTPGSAIVKPQNRPGQGMQQQNLNRDKSQQEKVQVLGSHKSP LCNIDLNCVINFEEFAKQLTNEEQQQLLKYLPPVDSGRLPESIRAMFDSPQFKENLSSYQQLMAEGVFDLSFSGAKSEDCKTLKRLTLSNFSKSKWVEHY NLLKKCRNNAGNSPAVKGNHVASNFSSSSQRIPEMKMMTRSPKRSVTYVNNELTENEASYFSPKSLFALPPEGGFEDSLNFVDNDDEGDLLLDVPSNGSF PQAELLHLSNLGQQASTSSSSIRPLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	5.7	0.7875
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	7.3	0.7841
AT1G24330			ARM repeat superfamily protein...		Lus10011370 [exp]	15.2	0.7364
AT5G65000			Nucleotide-sugar transporter f...		Lus10042484 [exp]	15.3	0.6971
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	16.7	0.7451
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	17.8	0.7726
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	20.5	0.6822
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	22.8	0.7436
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	25.0	0.7350
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	25.4	0.7706

Compare expression of checked genes

Lus10011008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.