Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06634 315 / 3e-105 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) AT5G04240 53 / 2e-07 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 53 / 3e-07 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT1G72050 47 / 1e-05 C2H2ZnF TFIIIA transcription factor IIIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000585 [exp] 390 / 4e-135 AT4G06634 319 / 3e-107 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10015657 [exp] 53 / 2e-07 AT1G72050 394 / 9e-136 transcription factor IIIA (.1.2) Lus10043332 [exp] 53 / 3e-07 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10019482 [exp] 52 / 9e-07 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10037673 [exp] 48 / 6e-06 AT1G72050 356 / 1e-121 transcription factor IIIA (.1.2) Lus10037989 [exp] 46 / 6e-05 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10009218 [exp] 45 / 0.0002 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G221700 [exp] 351 / 1e-119 AT4G06634 432 / 4e-151 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.003G010400 [exp] 347 / 5e-118 AT4G06634 408 / 7e-142 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.013G108600 [exp] 58 / 4e-09 AT1G72050 410 / 3e-142 transcription factor IIIA (.1.2) Potri.019G081100 [exp] 56 / 1e-08 AT1G72050 413 / 2e-143 transcription factor IIIA (.1.2) Potri.015G089000 [exp] 55 / 7e-08 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 54 / 1e-07 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.010G224700 [exp] 47 / 2e-05 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 45 / 9e-05 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF00096 [flax] [poplar] zf-C2H2 Zinc finger, C2H2 type
Representative CDS sequence Show only first row Show all	>Lus10011009 pacid=23148668 polypeptide=Lus10011009 locus=Lus10011009.g ID=Lus10011009.BGIv1.0 annot-version=v1.0 ATGGAGACGCACTACAGTCACAACCCGTTCGACAGACGCCCGATTTTCGCTTCCAAGGCTCCCGCAGTTAAATGGTTCAAGGAATGGGTACCCCAGGATG TTGTAGCTACCGGTGGAAAGTGTTCGATTTTAAAATGGGTAACAGAGAGCCAATTAAAGGCCTTAAAGGAGAAGGCCAAAGAGCCACCAGTACCGGAGCT GGAACCAGAACCTACTACCGAAGTTTTGTTCCTTTGCAGTTTTGATAGCTGTGGGAAAACCTTCATAGACGCTGGCGCTTTGAGAAAGCATTCTCATATC CATGGCGAACGCCAGTATGTTTGTCACTTTGAAGGATGCGGCAAGAAGTTCATCGACAGTTCAAAGTTAAAACGGCACAACTTGATTCATACTGGGGAGA GGAACTTCGTTTGTCCACATGAAGATTGTGGCAAGGCCTTCTCGTTGGATTTCAACCTCCGGTCGCATATGAAGACACATTCGCAAGAGAACTACCATAT CTGTCCGTTCGCGGAATGCGGGAAGAGATACGCTCACGACTACAAGCTACGGAACCACATCCAGTCTCAGCACGGAAAATCCGGGTTTGCATCTAATCAG AGTCCAACTCCGGAGACAGTGAAGTATGCAACCCCGCCGGAGAAAACTCCGAAAGCTCCAAAGCCACCGCCACCATCAGCATCATCATCAAGGCCACCAG CAGCACCTACACCGCCCTCACTAGACCGTCCTTATGCGTGCCCTTACCATGCTTGCCGGAAAGCGTACATCCACGAGTACAAGCTCAAGCTCCACCTGAG GGACCACCCGGACCACAACATCGACGAGAATCATCATCATCACCACAATAACGCCGATAATGGCATGGACGACGAGAATGCCAATGGCGGAGGCAGTAGG AGGAGCAGGGCGAAGCCGAGCTTGAAGACTCCTCCTACGACAAAAGTGGCGAAACGGAAAGCTGGTTCGAGCCCTTCTCCGAACGTGGTGGCAAAGAAGG CGGCGGTGGTGTGGCCGCCGGGTGGTAACGAGGAAGAGGATAGTGAAGAGACTGAGGAGGATAGAGAGAGCGGTGGTGAAGATGGTTGGAGATATAGGGA AGGGAATGAGGAGGAAGATGATGAAGAGACTGAGTATGAAGACTGA
AA sequence Show only first row Show all	>Lus10011009 pacid=23148668 polypeptide=Lus10011009 locus=Lus10011009.g ID=Lus10011009.BGIv1.0 annot-version=v1.0 METHYSHNPFDRRPIFASKAPAVKWFKEWVPQDVVATGGKCSILKWVTESQLKALKEKAKEPPVPELEPEPTTEVLFLCSFDSCGKTFIDAGALRKHSHI HGERQYVCHFEGCGKKFIDSSKLKRHNLIHTGERNFVCPHEDCGKAFSLDFNLRSHMKTHSQENYHICPFAECGKRYAHDYKLRNHIQSQHGKSGFASNQ SPTPETVKYATPPEKTPKAPKPPPPSASSSRPPAAPTPPSLDRPYACPYHACRKAYIHEYKLKLHLRDHPDHNIDENHHHHHNNADNGMDDENANGGGSR RSRAKPSLKTPPTTKVAKRKAGSSPSPNVVAKKAAVVWPPGGNEEEDSEETEEDRESGGEDGWRYREGNEEEDDEETEYED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10011009 [exp]	0	1
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	5.5	0.7703
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10034215 [exp]	10.6	0.7105
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	11.4	0.7128
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	13.8	0.7580
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	15.2	0.7086
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	17.5	0.7295
AT4G34630			unknown protein		Lus10028793 [exp]	18.2	0.7156
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	19.5	0.6866
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	25.5	0.6805
AT2G27180			unknown protein		Lus10008446 [exp]	26.6	0.7108

Compare expression of checked genes

Lus10011009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.