Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17570 259 / 7e-79 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT5G47140 231 / 5e-69 GATA GATA27 GATA transcription factor 27 (.1) AT3G45170 57 / 3e-09 GATA GATA14 GATA transcription factor 14 (.1) AT2G28340 53 / 2e-07 GATA GATA13 GATA transcription factor 13 (.1) AT4G36240 51 / 6e-07 GATA GATA7 GATA transcription factor 7 (.1) AT3G24050 51 / 1e-06 GATA GATA1 GATA transcription factor 1 (.1) AT3G21175 51 / 1e-06 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT5G66320 51 / 1e-06 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 51 / 1e-06 GATA GATA6 GATA transcription factor 6 (.1) AT1G08010 50 / 2e-06 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011008 [exp] 498 / 2e-171 AT4G17570 470 / 5e-162 GATA transcription factor 26 (.1.2.3) Lus10000587 [exp] 486 / 3e-166 AT4G17570 394 / 1e-131 GATA transcription factor 26 (.1.2.3) Lus10041313 [exp] 55 / 6e-08 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10025829 [exp] 55 / 6e-08 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037398 [exp] 55 / 8e-08 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10038273 [exp] 54 / 2e-07 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10016092 [exp] 52 / 5e-07 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 49 / 5e-07 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10021466 [exp] 52 / 6e-07 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082800 [exp] 403 / 6e-134 AT4G17570 479 / 4e-165 GATA transcription factor 26 (.1.2.3) Potri.001G151700 [exp] 395 / 5e-131 AT4G17570 485 / 1e-167 GATA transcription factor 26 (.1.2.3) Potri.003G174800 [exp] 52 / 4e-07 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.001G188500 [exp] 52 / 5e-07 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.007G116550 [exp] 52 / 5e-07 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G016600 [exp] 52 / 7e-07 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.004G211800 [exp] 51 / 1e-06 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.001G053500 [exp] 51 / 1e-06 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.005G117600 [exp] 50 / 2e-06 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.010G223300 [exp] 50 / 3e-06 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10011010 pacid=23148656 polypeptide=Lus10011010 locus=Lus10011010.g ID=Lus10011010.BGIv1.0 annot-version=v1.0 ATGGGGAAGCAAGGGCCTTGCTATCACTGCGGAGTTACAAGCACACCTCTGTGGCGAAACGGACCCCCCGAGAAGCCGGTCCTGTGCAATGCGTGCGGGT CTAGGTGGCGCACGAAAGGAACTCTCGTGAACTACACGCCTCTCCATTCTCGGCCGGACCCTGTCGATTACGAGCATCACAGAGTTTCCAGACTGAAGAA CATATCTGTTAATAGAAATGAAGAGATAAAGTTCGTCAAAAGGAAGGCTATCGTTGATGCTGAGGTGGCTTTGGCTGAAGATGTTAGTAATAGATCGAGT TCTGGATCAGCCATATCGAATTCTGAGAGCTGTGTGCAGCTCGGAAGCAGCATCGATGCTAGCTCTGGTCAAACAGTGGTCTGGGACTCGACTGTGCCGT CTCGAAAGAGAACCTGTGTGAACCGTCCGAAACATTCCTCGGTCGAGAAGCTCACCAAGGATCTCTACACGATATGGCACGAACAGCAGTCTTCTTGCTT CTCAGGCTCTTCTGAAGAGGATGATTTGCTCTTCGAGAGCGAAACTCCGATGGTCTCTGTCGAGATAGGACATGGAAGTGTCCTCATCAGGCATCCTAGT ACCATAGCTCGAGATGAGGAGTCCGAAGCTAGTTCCCTTTCGGTTAATGAAGCTTACTCCCGTTCAGTCAACCGTCCTGGTCAAGGAATGCAGCATCATC AGCAGCTTATCCGAGACGAGAAGGTGCAGATTCTCGGCAGTCGTAAGTCGCCTCTGTGTAGCATTGATCTGAATGTAAGTTTTCACGACGGCTCTGGTCA AACAGTGGTCTGGGACTCGACTGTGCCGTCTCGAAAGAGAACCTGTGTGAACCGTCCGAAACATTCCTCGGTCGAGAAGCTCACCAAGGATCTCTACACG ATATGGCACGAACAGCAGTCTTCTTGCTTCTCAGGCTCTTCTGAAGAGGATGATTTGCTCTTCGAGAGCGAAACTCCGATGGTCTCTGTCGAGATAGGAC ATGGAAGTGTCCTCATCAGGCATCCTAGTACCATAGCTCGAGATGAGGAGTCCGAAGCTAGTTCCCTTTCGGTTAATGAAGCTTACTCCCGTTCAGTCAA CCGTCCTGGTCAAGGAATGCAGCATCATCAGCAGCTTATCCGAGACGAGAAGGTGCAGATTCTCGGCAGTCGTAAGTCGCCTCTGTGTAGCATTGATCTG AATTGTATAGTTAATTTCGAGGAGTTCGCGAAACAGTTGACTGATGAAGAGCAGCAGCAGTTGACCAAATATCTGCCGACACTGGACACCAGTAGCATCA GAGCCATGTTTGATAGCTCTCAGTTCAAGGAGAACTTGTGTTCTTATCAACAGCTACTAGCAGAAGGAGTCTTTGATCTGTCCTTTACAGAAGGGAAGGC CGAAGACTGTAAGACTCTGAAGAGGCTTACACTATCCGACTTCTCGAAATCGAAATGGGTGGAGCATTATAATCTACTCAAGGTTCGAACCGATACTTCA ACTTCTGCTGGGAAGGGAAAGCATGCGGCTTCGAATTTCTGGATTAATGCTAAGAGGCCTAGCAGCGAGAGCTCGAGTCAAAGGATTCCAGAAATGAAGA TGATGAGAAGCCCTAAGAGGAGCGTTATTTACGTGAACAATGAGCTCACGGATAACGAAGCGTCGTACTTCAGTCCGAAGAGCCTGTTCGCATTGCCTCC CGAGGGCAGCGGGTCCCTCAATTTCGTCAACGAAGGAGACTTACTGGTGGATGTGCCATCCAACGGCTCATTCCCTCAGGCAGAACTGCTGCATCAACAT CCAGCTTTGAGGAAGCTTGGGCAGCAAGCAAGCACTAGTAGTAGCTCGATTCACCCATTCCATTCCTGA
AA sequence Show only first row Show all	>Lus10011010 pacid=23148656 polypeptide=Lus10011010 locus=Lus10011010.g ID=Lus10011010.BGIv1.0 annot-version=v1.0 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHSRPDPVDYEHHRVSRLKNISVNRNEEIKFVKRKAIVDAEVALAEDVSNRSS SGSAISNSESCVQLGSSIDASSGQTVVWDSTVPSRKRTCVNRPKHSSVEKLTKDLYTIWHEQQSSCFSGSSEEDDLLFESETPMVSVEIGHGSVLIRHPS TIARDEESEASSLSVNEAYSRSVNRPGQGMQHHQQLIRDEKVQILGSRKSPLCSIDLNVSFHDGSGQTVVWDSTVPSRKRTCVNRPKHSSVEKLTKDLYT IWHEQQSSCFSGSSEEDDLLFESETPMVSVEIGHGSVLIRHPSTIARDEESEASSLSVNEAYSRSVNRPGQGMQHHQQLIRDEKVQILGSRKSPLCSIDL NCIVNFEEFAKQLTDEEQQQLTKYLPTLDTSSIRAMFDSSQFKENLCSYQQLLAEGVFDLSFTEGKAEDCKTLKRLTLSDFSKSKWVEHYNLLKVRTDTS TSAGKGKHAASNFWINAKRPSSESSSQRIPEMKMMRSPKRSVIYVNNELTDNEASYFSPKSLFALPPEGSGSLNFVNEGDLLVDVPSNGSFPQAELLHQH PALRKLGQQASTSSSSIHPFHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	0	1
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10007049 [exp]	3.5	0.8284
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	4.2	0.8528
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	11.2	0.8375
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	12.6	0.8293
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	24.0	0.8325
AT5G35690			unknown protein		Lus10002262 [exp]	30.1	0.8376
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10032244 [exp]	36.3	0.7507
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	41.8	0.8296
AT5G04250			Cysteine proteinases superfami...		Lus10037977 [exp]	47.9	0.8313
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	70.1	0.7937

Compare expression of checked genes

Lus10011010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.