Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 566 / 0 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 548 / 0 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G04940 319 / 5e-96 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G13960 309 / 5e-93 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G73100 306 / 1e-91 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G33290 298 / 2e-88 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT4G13460 293 / 9e-87 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT1G17770 247 / 7e-70 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 239 / 9e-67 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 159 / 1e-42 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001011 [exp] 1694 / 0 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 627 / 0 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 338 / 8e-103 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 333 / 8e-101 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10029470 [exp] 326 / 1e-98 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 319 / 4e-96 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 313 / 1e-93 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10023714 [exp] 302 / 5e-90 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10035115 [exp] 301 / 4e-89 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 630 / 0 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.016G025300 [exp] 323 / 1e-97 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 322 / 2e-97 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 320 / 3e-96 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.001G036800 [exp] 318 / 7e-96 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 318 / 2e-95 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G188700 [exp] 315 / 2e-94 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.008G173100 [exp] 308 / 1e-91 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.014G143900 [exp] 288 / 2e-84 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 277 / 8e-80 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10011011 pacid=23148634 polypeptide=Lus10011011 locus=Lus10011011.g ID=Lus10011011.BGIv1.0 annot-version=v1.0 ATGGGATTGATGGACAATAATATGGTGCAAACAAAGTCGATGAATGTGGTGTCGTCCGGCAGCGGAGATGCTGAATTTCGAAAGCCCGAGTTTAAGCGGC CGAGGAGAGTCTATGGTGTTAGGCATTTCCCTCCCGGTTGCGGCCCGCGTGCGAGAAGTATTGTGGCTAATCTAGCGGGCGATGATGATCCCACTGGGAT CGGAGCTATCAAGGTACCGGTGTTGGTACATTCGGATTCTAGACCAGACGACTTGGTAGTGTCTAGTGATGATGCTGTGAATTTCAATCCGATAGGATTG GAGATTGCCAGCAGTGTTGTTGGTGATGATTCCGGCCGTGTTCTGGAAAATGGGATCGAGTCTCGTGTTTTGACAATTTCGTTGGAGTTGGAAGATGAAA GCAATGCTGGAAATCGTGCAACTAAAATTGGATCCCATGATTCAAGGCTGTCTGGCGAGCAAACGGATAACCTCAAGTTCAATGGAGATGTCCTAACAGT GGAGAGTCCCCAATCTGCAGGGAGTTCACTATCTGAGAACTTGGAATTACCGGTAAATTTGTTACCGGGCGAGGCCATCGGGATATCAAAAGACGGCTCA TCCGATGCAGATGTTCCTGCTCCACCAAAGATGACTTCCATGTTTAAATATCCTCCAAGGAGGAAAATGTTAGGTGTTAGAAGCTTTCCTCCAAACTGTG GAAGAAATGCCAAACCTTTTCACAAGGTAGAAGAAGAAGAAGAGCGGGGGAAAAACGAATCTGAAACGGTTATGGATGTTAATGTGAATGCTGGATCTCT CGAGAGACAAATAGAAAGCAATGTCCTAGAACAGGACATTGTTACAGTTGACACAAAGGCGAAAGAGTTTATCGAGGAAGCAACAAGGAGTCCGGATGAA GTTGTATCTTGTTCCGTGGACGTGGCAATGGCTGATCAAGAATGTGAACACGACAGGGGCACAGAGCTTGGGAAAAACTCTAATGTAGTACTTAACTCTA CTAGACAAGGAGATTCGAAGGTGCACCTGCACGAGGAACAATTAGAATGCAATGTCCTAGAACAGAATAGTGTTATAGTCGACACAAAGGGGGAAGAGTT TATCGAGAAAGCATCAAGGAGTCCCAATGAAGTTGTATCTTGTTCCGAGGATGTAGCAAGGGCTGATCGAGAATGCTACTGTGATAGAGGCACTATGTCA CCGCATAATCACCTTCAGATTGAGCTATGGGAAAAGTCGAAGGCGCACTTGCAGGAGGACTCTGATGTTCGTAAGGCGAAGGTTGCCGCCCAACGAGAGA ATACAAAGCTATCCGTCCTGAAGAAGATAACCAAACAAAAGTGTGGTGGTCTCAAGGTTGCAGCAGCTAATGTGAGTGAGAAGAGAAACAAGAAGAAAAA GAAATTCGTAGTCCGAGAACATAGAAAATCGGCTTCCACACTGAGGGAGAAATCTTCACACAAATCGGTAAAGACAGATGGATCTTTTAAGCAAGAGGCT GTATGTGATGAACTAAATGATGCAGAGAATGATGAGAAATGCAATGGTTCGCTATCAATTAGTGGGAACCTTACTCCTTTCGGTCCTGGTAGTAGTTCGA AAGGCTTTGCTAGTAGTGCGAGGAAGAAGGTGAGGGAGATATTACGTCTATTTCACTTCATCTGTAGGAAGTTGGTTCATGAAGCGGAATCAAGATCAAA GAAAGGAGGGAGGAGTCAAAGTGTAATCGGACAACGCGTTGACTGTATCGCCGCCAAAGAGCTTAGGAATCGAGGATTGTGCCTTAACGAAGGCCAGTGT ATCATCGGAGATTTGCCCGGAGTTGAAGTTGGCGACGAGTTTCAGTTCAGGCTAGAGCTGAACGTGATCGGTCTCCATCGGCAGACTCAGGCCGGAATCG ATTTCGTAAAAAAAGGTCGAGATTTTATAGCGGTGAGTATCGTGGCGTCAGCTGGATGCGATGATAACCTGGAGAATTCAGACGTGTTGGACTATACCGG TCACGGAGGGAACTCGGCGAAGGATAAAGAAGCCGAAGATCAGAAGCTTGAGAAAGGTAATCTTGGTTTGAAAAACAGCATTAGGACTCGGAATCCTGTG AGAGTGATTCGTGGTTATATGAAAAAACCGGAATCGGGTGAGGTTAGAAGTAAGGTTTATGTATATGATGGCTTATACAACGTGGAGAAGTACTGGCAAG AGCCTGGACCACACGGGAAGCTAGTATTTAAGTTTCGGTTGGTTCGAATTCCCGGGCAACCGGAACTCGCTTGGAAACAAGTGAAGAAGTCAAAGAAGCT TAAACTTAGGGAAGGCTTATGTGTGAGTGATATTTCACAGGGAAAAGAGTTGATTCCTATATGTGCTGTGAATACTGTTGACAATGAGAAGCCTCCATCA TTTAGTTACATAACTAAGATTATGTATCCGGATACCTTGGCCGCACCCGATGGGTGCGGCTGTAGGACCGGGTGCTCAGAATCTGGTTCATCGTGTTCTT GCGTGGCGAAGAATGGTGGCGAGATACCTTTCAATTATAACGGAGCGATTGTCGAAGCGAAGGATCTCGTCTATGAGTGCGGTCCTTCTTGTAAGTGCCC ACCTTCCTGCTATAATCGAGTCAGCCAGAACGGGATCAAGATTCAACTCGAGGTTTTTAAGACCGATTCAAGAGGATGGGGTGTTCGGTCTCTGAACTCG ATCTCGTCCGGAAGTTTTATCTGCGAGTACGTCGGAGAACTTCTTGATGATGTTGAAGCTGAGCGGAGAACTAACGACGAGTATCTGTTCGATATTGGAG GATGTAGTAACGATGACGATTCAGAAGGGGATAATGGCTTGCCTAACTTCACTATCGATGCTGCGGAGTTTGGCAATGTGGGGAGGTTCATCAACCACAG TTGCTCTCCGAATCTTTACGCCCAGAACGTGCTATACGACCACGAGGATCGGAGGATCCCTCACATTATGCTCTTTGCTGCTGAAAACATTCCTCCGTTG CGAGAATTAACTTACCACTACAATTATCAAATCGATCAAGTCCGTGACTCGCAGGGCAACATAAAGATGAAAAGTTGCTACTGTGGTTCTTCAGAGTGCA CCGGTCGGATGTATTAA
AA sequence Show only first row Show all	>Lus10011011 pacid=23148634 polypeptide=Lus10011011 locus=Lus10011011.g ID=Lus10011011.BGIv1.0 annot-version=v1.0 MGLMDNNMVQTKSMNVVSSGSGDAEFRKPEFKRPRRVYGVRHFPPGCGPRARSIVANLAGDDDPTGIGAIKVPVLVHSDSRPDDLVVSSDDAVNFNPIGL EIASSVVGDDSGRVLENGIESRVLTISLELEDESNAGNRATKIGSHDSRLSGEQTDNLKFNGDVLTVESPQSAGSSLSENLELPVNLLPGEAIGISKDGS SDADVPAPPKMTSMFKYPPRRKMLGVRSFPPNCGRNAKPFHKVEEEEERGKNESETVMDVNVNAGSLERQIESNVLEQDIVTVDTKAKEFIEEATRSPDE VVSCSVDVAMADQECEHDRGTELGKNSNVVLNSTRQGDSKVHLHEEQLECNVLEQNSVIVDTKGEEFIEKASRSPNEVVSCSEDVARADRECYCDRGTMS PHNHLQIELWEKSKAHLQEDSDVRKAKVAAQRENTKLSVLKKITKQKCGGLKVAAANVSEKRNKKKKKFVVREHRKSASTLREKSSHKSVKTDGSFKQEA VCDELNDAENDEKCNGSLSISGNLTPFGPGSSSKGFASSARKKVREILRLFHFICRKLVHEAESRSKKGGRSQSVIGQRVDCIAAKELRNRGLCLNEGQC IIGDLPGVEVGDEFQFRLELNVIGLHRQTQAGIDFVKKGRDFIAVSIVASAGCDDNLENSDVLDYTGHGGNSAKDKEAEDQKLEKGNLGLKNSIRTRNPV RVIRGYMKKPESGEVRSKVYVYDGLYNVEKYWQEPGPHGKLVFKFRLVRIPGQPELAWKQVKKSKKLKLREGLCVSDISQGKELIPICAVNTVDNEKPPS FSYITKIMYPDTLAAPDGCGCRTGCSESGSSCSCVAKNGGEIPFNYNGAIVEAKDLVYECGPSCKCPPSCYNRVSQNGIKIQLEVFKTDSRGWGVRSLNS ISSGSFICEYVGELLDDVEAERRTNDEYLFDIGGCSNDDDSEGDNGLPNFTIDAAEFGNVGRFINHSCSPNLYAQNVLYDHEDRRIPHIMLFAAENIPPL RELTYHYNYQIDQVRDSQGNIKMKSCYCGSSECTGRMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	0	1
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	3.2	0.8197
AT3G20720			unknown protein		Lus10043072 [exp]	5.3	0.8201
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	5.9	0.8082
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	11.7	0.8036
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10031927 [exp]	12.3	0.6906
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	12.8	0.8190
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	14.8	0.7389
AT5G58510			unknown protein		Lus10031851 [exp]	16.2	0.7584
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	23.9	0.7874
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	26.2	0.7699

Compare expression of checked genes

Lus10011011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.