Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 216 / 2e-70 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G45960 146 / 1e-43 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G38400 142 / 2e-41 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 133 / 1e-37 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G28250 128 / 6e-36 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 127 / 2e-35 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 116 / 3e-31 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 104 / 7e-27 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 102 / 3e-26 EXPB6 beta expansin 6 (.1) AT3G60570 92 / 3e-22 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001010 [exp] 471 / 7e-171 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10000957 [exp] 333 / 3e-116 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 330 / 4e-115 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10011013 [exp] 245 / 1e-81 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 243 / 1e-80 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 242 / 2e-80 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10030931 [exp] 193 / 4e-61 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10003336 [exp] 168 / 3e-51 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 166 / 3e-50 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 253 / 5e-85 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 251 / 5e-84 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 193 / 3e-61 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 187 / 6e-59 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 180 / 8e-56 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 174 / 1e-53 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.013G134300 [exp] 137 / 4e-39 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 132 / 2e-37 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 115 / 5e-31 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G112900 [exp] 78 / 9e-17 AT1G12560 364 / 5e-128 expansin A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10011012 pacid=23148666 polypeptide=Lus10011012 locus=Lus10011012.g ID=Lus10011012.BGIv1.0 annot-version=v1.0 ATGAGTTCTCTTTTTATTATCTGCCTCATTGCTTCTGCATCATTGCTGCTGTTCCCATCATCATCGACAGGAGCATCCGAGTTTCAAAGATCGGTGGCCG AGTACTATCGCAGCTCGGATTGCTTGGGTACATCAACTGGAGCTTGTGGCTATGGAATCCATGGACGAACCCTCAATGGTGCACTCGTTGCCGGAGTTTC GAGGCTATGGGACAGCGGGTATAGTTGCGGTGCTTGCTACCAGGTGAGATGCAAGGACAACTACCTATGCAAGGAGGAAGGGATAACTGTGGTCGTGACT GACAACGCTTCGGGGGGCAATACCGACTTCATCATGAGCGCTCATGCCTACGGGAGCATGGCTCGTCAGAACAGGACAGAGGAGCTCTACTGGTTAGGCA TGGTGGACGTCGAATACCGGCGCACACCTTGCAAGTTTTCGGGCTATAACCTCATTTTCAAGGTCGTGGAGCAGAGCAGATACCCTGAGTACCTGGCCAT TGCCCCTATGTTCCATGATGGAGAAAATGACATCTATGGTCTGCAAGTAATGCAGGAAGGTGGTGAGGAATGGAAAACTATGGAGAAAGCATGGGGTGGA GTCTGGCATTTGCCTGTTCCACCAAGAGGATCCCTTAAGCTTAAGGTCCAAGTAGGCAACAGTTATGGAGACAAGAAATGGATAGAGGCAAAGAAGTCCT TACCGAGTTCGTGGAAGCCCGGTGCAGCTTACGATTCCCATGTCCAGCTTTCTTGA
AA sequence Show only first row Show all	>Lus10011012 pacid=23148666 polypeptide=Lus10011012 locus=Lus10011012.g ID=Lus10011012.BGIv1.0 annot-version=v1.0 MSSLFIICLIASASLLLFPSSSTGASEFQRSVAEYYRSSDCLGTSTGACGYGIHGRTLNGALVAGVSRLWDSGYSCGACYQVRCKDNYLCKEEGITVVVT DNASGGNTDFIMSAHAYGSMARQNRTEELYWLGMVDVEYRRTPCKFSGYNLIFKVVEQSRYPEYLAIAPMFHDGENDIYGLQVMQEGGEEWKTMEKAWGG VWHLPVPPRGSLKLKVQVGNSYGDKKWIEAKKSLPSSWKPGAAYDSHVQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	0	1
					Lus10038131 [exp]	2.4	0.8086
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	3.7	0.8424
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	12.6	0.7977
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	15.2	0.8241
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	15.9	0.7239
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	16.1	0.8055
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	16.7	0.7964
AT5G07740			actin binding (.1)		Lus10015725 [exp]	16.9	0.7918
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012483 [exp]	18.8	0.7835
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	19.3	0.8018

Compare expression of checked genes

Lus10011012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.