Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 302 / 2e-104 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 171 / 1e-52 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 169 / 2e-52 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G45970 167 / 5e-51 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G20750 135 / 2e-38 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 132 / 2e-37 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT1G65680 131 / 4e-37 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 109 / 9e-29 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 105 / 1e-27 EXPB6 beta expansin 6 (.1) AT2G40610 97 / 5e-24 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001009 [exp] 476 / 5e-173 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 383 / 2e-136 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10000957 [exp] 256 / 3e-86 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 255 / 9e-86 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10011012 [exp] 249 / 2e-83 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 247 / 2e-82 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10030931 [exp] 213 / 3e-69 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10003336 [exp] 186 / 3e-58 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 183 / 3e-57 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 368 / 2e-130 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 345 / 4e-121 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 214 / 8e-70 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 213 / 3e-69 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 201 / 4e-64 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 196 / 2e-62 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.013G134300 [exp] 136 / 4e-39 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 131 / 2e-37 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 124 / 2e-34 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G001100 [exp] 91 / 4e-22 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10011013 pacid=23148687 polypeptide=Lus10011013 locus=Lus10011013.g ID=Lus10011013.BGIv1.0 annot-version=v1.0 ATGATTTTGGCCATTTGGCCAAAATCCACCTTTGGGGATGATTATGTCTACTCAAGAGCCACTTTCTATGGCAGTCCTGATTGCCTGGGGACTCCAACTG GTGCTTGTGGGTATGGTGAATTTGGCAGGAATGTGAATGATGCCAACGTGGCTGGTGTCTCTAAGCTCTGGAAGAATGGCACTGGCTGCGGTAATTGCTA CCAGGTGAGGTGCAAGGCACCAAATGTGTGCAATGAGAATGGAGTGAACATAGTGGTGACCGACCACGGCGAGGGTGACCACACCGACTTCATCCTGAGC CCGCGGGCCTACGGACGAATGGCCCGACCTGAGTACGCGGCCGAGCTCTACAAATATGGCGTTGTAGATGTCGAGTACAAACGTATCCCTTGCAAGTATG CTGCCTCCAATGTCTTGTTCAAGGTCAATGAGCATAGCAAGTACCCTGACTACTTGGCCATTGTGCTTCTGTACCAAGGGGGCGAATACGACGTCGTTGC TGCTGAAATCTGGCAGGAGGACTGCAAGCAGTGGAGGGGGATGAGGAAGGCGTATGGGGCGGTGTGGGACGTGGTCTCGCCACCAAAAGGAGCCATAACA CTAAGGTTCCAAGTGATGAGCAGTGTGGAAGTGACTTGGATCGAGGCTAAGAGCGTCATCCCTAATGAATGGAAAGCTGGTGCCACTTATGATTCAACCG TGCAACTCAACTAA
AA sequence Show only first row Show all	>Lus10011013 pacid=23148687 polypeptide=Lus10011013 locus=Lus10011013.g ID=Lus10011013.BGIv1.0 annot-version=v1.0 MILAIWPKSTFGDDYVYSRATFYGSPDCLGTPTGACGYGEFGRNVNDANVAGVSKLWKNGTGCGNCYQVRCKAPNVCNENGVNIVVTDHGEGDHTDFILS PRAYGRMARPEYAAELYKYGVVDVEYKRIPCKYAASNVLFKVNEHSKYPDYLAIVLLYQGGEYDVVAAEIWQEDCKQWRGMRKAYGAVWDVVSPPKGAIT LRFQVMSSVEVTWIEAKSVIPNEWKAGATYDSTVQLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	0	1
AT3G19920			unknown protein		Lus10017384 [exp]	4.0	0.8334
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001672 [exp]	9.2	0.8089
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	12.5	0.8733
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	12.8	0.7990
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	14.2	0.8659
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	17.7	0.8069
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	20.7	0.8324
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	22.5	0.8578
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	37.9	0.8458
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000074 [exp]	51.7	0.8209

Compare expression of checked genes

Lus10011013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.