Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 94 / 7e-21 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16210 82 / 4e-17 F-box family protein (.1) AT3G06240 76 / 8e-15 F-box family protein (.1) AT4G22390 74 / 3e-14 F-box associated ubiquitination effector family protein (.1) AT3G23880 64 / 5e-11 F-box and associated interaction domains-containing protein (.1) AT3G10240 62 / 3e-10 F-box and associated interaction domains-containing protein (.1) AT3G52320 62 / 4e-10 F-box and associated interaction domains-containing protein (.1) AT1G11270 61 / 4e-10 F-box and associated interaction domains-containing protein (.1.2.3) AT1G47790 61 / 5e-10 F-box and associated interaction domains-containing protein (.1) AT1G53550 61 / 5e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006697 [exp] 333 / 5e-111 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10007040 [exp] 323 / 2e-107 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10006687 [exp] 275 / 1e-89 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10024389 [exp] 270 / 3e-87 AT4G12560 62 / 1e-10 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10014136 [exp] 106 / 7e-27 AT3G06240 45 / 2e-10 F-box family protein (.1) Lus10023263 [exp] 91 / 4e-21 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) Lus10032343 [exp] 93 / 7e-21 AT1G07700 218 / 9e-71 Thioredoxin superfamily protein (.1.2.3) Lus10031020 [exp] 90 / 2e-19 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10038541 [exp] 84 / 3e-19 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014300 [exp] 100 / 8e-23 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.017G058900 [exp] 93 / 1e-20 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.015G013800 [exp] 92 / 2e-20 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 92 / 4e-20 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058000 [exp] 91 / 5e-20 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.006G013000 [exp] 89 / 5e-19 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 89 / 7e-19 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.008G006900 [exp] 86 / 8e-18 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 84 / 2e-17 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.015G013500 [exp] 82 / 1e-16 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011015 pacid=23148662 polypeptide=Lus10011015 locus=Lus10011015.g ID=Lus10011015.BGIv1.0 annot-version=v1.0 ATGGGAGGTATGAAGAAGAGAAAACAAGCATGGCCGGACAGGAGCGTAATAAGAAGAAAATCAGCTTCTACTTCTACCGAGGAATCAATGCCGTTCTTAC CGGAGGAGATCGTGATGGACATCTTGGTCAAACTTCCGGCAAAGACTCTGCTCAGATTCAAGTGCTTGTCAACCCGCATTCACAATCTCACTCAATCCCC TAATTTCGTGGCTGCACACGCCGAACATCAGCGCGTGAATCACACAGGCATCTTCCTCCTCGCTCGTTCTTTAGTTCATACCCAGGGTAAAAAAAATACT AACAATAGCAGTACTGTTTGCAGGTTCTCGTTACCCTTTCTGAAGAGCCTTAATAAGTATTCGGGTTTGAAATGTGTCGGATCATGGAATGGTTTAGTCT GTTTGAATTATCCGAATCAGGATAGAATGATTCTCTGGAATCCAGCCACCTCCAGATTCTGTTTTGGTCCTCCTCCTATGATTCGTCATGACTCTTCTAG TTGTAATAAGAACACAATGGTTTATGGATTTGGATACGATTCTGTGTCGGATGATTACAAGTCTGTCAAGTTTGTCACCGTCAAGGCTAAAGACCTAGAG GTACAGGGTTCCATCGAAGCGGAGGTTCTGAGCTGGGGGAAGAGGAGTTGGAAAAGGCTCAAATACGAAAAGGAAAGCTGCTTAGACTACGAACGAATCT TCTGCGGAATCCAACCTGATACTTCCGTGACGAGCAAAGGCAGAGTGAATTGGAGGGTTAGCTATTCAGGTATGTTGCTTTCGTTCAAATTCGACGAAGA GAAATTCGAGTTGATATCGCCACCACCGAATGCCCGCTTTGGTGATGTTTATACGGCATGCGCTTGGAAAGGATCACTTGGCATGCTCGTTCAGAACGGA TCGCGTACTGCTATTTGGCTGTTCAATGATGATGATCAAGATCAAGATCATTCATGTTGTTGGTCCAAACTGTTGACAGTCGAAACTGATTATACTCACT GGTGGGTGGGAGAACCGGAGGGGGTATATTGGAGGACTGACTACATTTGGAATTCGTTCTTGGTGTATCCATATGATGATTCTGTTGCTTCGAAGTTCAT GTCGGGGGGCAATGTGCAGTCTCGAGCAGGTTTCCGAATCGAAAGAGGTTTCGAGTTTGCGGCGACATTGGTTCCGGTCCCAGGCTCGGCGTCATATGCA ACAAGTAATAAGCACTCTCGAAGAAAGCAGAGAGGCCGAGGTAAGAAATACCGTGAAAGAGCAACAAACAGAAGGATGCATAGGATGTTGGCTTTATAA
AA sequence Show only first row Show all	>Lus10011015 pacid=23148662 polypeptide=Lus10011015 locus=Lus10011015.g ID=Lus10011015.BGIv1.0 annot-version=v1.0 MGGMKKRKQAWPDRSVIRRKSASTSTEESMPFLPEEIVMDILVKLPAKTLLRFKCLSTRIHNLTQSPNFVAAHAEHQRVNHTGIFLLARSLVHTQGKKNT NNSSTVCRFSLPFLKSLNKYSGLKCVGSWNGLVCLNYPNQDRMILWNPATSRFCFGPPPMIRHDSSSCNKNTMVYGFGYDSVSDDYKSVKFVTVKAKDLE VQGSIEAEVLSWGKRSWKRLKYEKESCLDYERIFCGIQPDTSVTSKGRVNWRVSYSGMLLSFKFDEEKFELISPPPNARFGDVYTACAWKGSLGMLVQNG SRTAIWLFNDDDQDQDHSCCWSKLLTVETDYTHWWVGEPEGVYWRTDYIWNSFLVYPYDDSVASKFMSGGNVQSRAGFRIERGFEFAATLVPVPGSASYA TSNKHSRRKQRGRGKKYRERATNRRMHRMLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	0	1
					Lus10005512 [exp]	4.5	0.7503
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	5.6	0.8312
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	7.9	0.8263
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	9.6	0.8263
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	11.1	0.8263
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	12.4	0.8242
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	13.6	0.8233
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	15.0	0.8219
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	15.7	0.8216
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	15.9	0.6605

Compare expression of checked genes

Lus10011015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.