Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 244 / 2e-81 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 237 / 8e-79 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001008 [exp] 353 / 1e-124 AT4G17600 270 / 2e-91 Chlorophyll A-B binding family protein (.1) Lus10040147 [exp] 265 / 2e-89 AT4G17600 289 / 1e-98 Chlorophyll A-B binding family protein (.1) Lus10000959 [exp] 0 / 1 AT4G17600 141 / 3e-65 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083500 [exp] 252 / 1e-84 AT4G17600 300 / 3e-103 Chlorophyll A-B binding family protein (.1) Potri.001G151300 [exp] 250 / 6e-84 AT4G17600 268 / 2e-90 Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10011016 pacid=23148629 polypeptide=Lus10011016 locus=Lus10011016.g ID=Lus10011016.BGIv1.0 annot-version=v1.0 ATGTCCATTTCCACGGCCCTCCGATCTCCTCCTCTACCGACGCAGTCGGCGTCAGCTACCAGTCGCAACCACCTCTCTCTCCGGAAAACCCTCTTCCTCA GATCCACCGGGAGAAATGTATCTTCCTCCTCCTCCTGCCTCTCGGCCGCAGGGGTGGCCGGAGTTCCCTCCGCTGCCGTCGCAGTGGCGGAGGCGAGCAA CGTAGCGGTGACGGAAGTTAAGAAGTTCGCTGACAGTCGCTGGGTGGAAGGGACCTGGGATTTGAAGCAGTTCAGGAAAGGCGGAGTGGCGGCGGAGACT GATTGGGACGCTGTGATTGACGCCGAGGCGAGGAGGCGAAAATGGCTAGAAAAGAACCCGGAATCGACAGGCAACGACGAGCCGATCCTCTTCGACACCT CGATCGTACCATGGTGGGCATGGATGAAGAGATACCACCTCCCTGAAGCCGAACTGGTCAATGGTCGAGCTGCGATGGTCGGGTTCTTCATGGCCTACGC GGTCGATAGCTTGACCGGAGTAGGGCTGGTGGACCAAATGGGAAACTTCTTCTGCAAGACACTGTTGTTTGCGGCCGTCGTTGGGGTGCTTGTGGTTCGA AAGAATGAAGATCTGGAGACGGTGAAAAAGCTTGTGGAGGAAAGTACCTTCTATGACAAGCAATGGCAGGCAGCTTGGAAGGAGGAGAATAACACTGCAA AAATCAAGTAG
AA sequence Show only first row Show all	>Lus10011016 pacid=23148629 polypeptide=Lus10011016 locus=Lus10011016.g ID=Lus10011016.BGIv1.0 annot-version=v1.0 MSISTALRSPPLPTQSASATSRNHLSLRKTLFLRSTGRNVSSSSSCLSAAGVAGVPSAAVAVAEASNVAVTEVKKFADSRWVEGTWDLKQFRKGGVAAET DWDAVIDAEARRRKWLEKNPESTGNDEPILFDTSIVPWWAWMKRYHLPEAELVNGRAAMVGFFMAYAVDSLTGVGLVDQMGNFFCKTLLFAAVVGVLVVR KNEDLETVKKLVEESTFYDKQWQAAWKEENNTAKIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	0	1
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	1.0	0.9053
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	2.4	0.8740
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	2.4	0.8990
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	3.0	0.8930
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	6.3	0.8792
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	6.7	0.8682
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	6.9	0.8831
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	7.5	0.8704
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	8.8	0.8604
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	11.0	0.8644

Compare expression of checked genes

Lus10011016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.