Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001006 [exp] 146 / 1e-38 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001007 [exp] 89 / 9e-22 ND / Lus10040146 [exp] 67 / 5e-12 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 64 / 6e-11 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011017 pacid=23148689 polypeptide=Lus10011017 locus=Lus10011017.g ID=Lus10011017.BGIv1.0 annot-version=v1.0 ATGCCTCCTCAAATGGCGAGGCTATGCAGTGACAAGCCAGTGATACTAAAAGTGTACGGCGAGAACCCAAAGAGGAGGAGAAGCAACGCATCCAAAAACG ACGTCGTGGGGGTCAACGGCAATAAGACCAAAGTCCACCACGTTCACCACCACCACCACCTCCACGTGGTCCATCACACGGCTGCCGATGAGAAGAAGCA GCAGAGGGCTCCGCTTCTTGGCAGCAGCAGCAACAGCGGTGGCCGAAAAGCGAGGCTTCTCAGCTTCTCGAGGCGGCTCAGGGAGTCCGCGGTGAACGAG GGTGGCGGGAGTAAGCGTCGTGAAGAAGCTCCGAAGCAGCCGTCTTCTTCTTCTTCCAATGGTAAGATCGTAGCAGTCAAGGAAAAGCCAAAGAAGTCTT CTTCTTCATCATCTTCACAAGGGTTTCAGAATTTCTTCAAGTCCATAGTGGTCGGGCCCCAAGGCAAAAAGAAAACATCTTCACGTTCTGGTTCGATGAC CGGAAATCCGGTCACAAATGTTATCAATGGACTCAAGATCCACAATAGGAACCCTAACCAAATGCTTTCTCCTCCCACGCATTACCAACTCCCCAAACAC ATACCTCCTCGTCGCATTCGTCGCGCGAAGCACAATCCCAATCTGAACCGAACCATGCGCCCTAACAACGAAACTCCGTGGCGAGACATCCACATTCACC CCTACCGGCATCCTAACCGACACCCAATAAAACTCGTCGAGCCCGCCCACGTTGGTCACCGTCCTGACCACAGTCCTCGAACCCACGAGGCTCGAGACGG TGATGCTCGGAGCGTTCAAGTCCGAGCACCACCACTGCCGTGGCCAACGAGAGCTCGTAGGCCGAGGGCGCGGGCAGGGCGACCCCACTGCCCGGCGGAC GAAGCCGTCGTCGACACCGGGGACGGAGCAGAGGAATCGGAGGTAATGGTTGAAGGAGGCGTTGAACACGAGGCCAGGGTCGATCGCCCAGGCCGGGTTG ATGGATCCGGACCCAAAATCGAAGGGGGTGGCTCGGGAGAGCTTGTTGTTGGCTGA
AA sequence Show only first row Show all	>Lus10011017 pacid=23148689 polypeptide=Lus10011017 locus=Lus10011017.g ID=Lus10011017.BGIv1.0 annot-version=v1.0 MPPQMARLCSDKPVILKVYGENPKRRRSNASKNDVVGVNGNKTKVHHVHHHHHLHVVHHTAADEKKQQRAPLLGSSSNSGGRKARLLSFSRRLRESAVNE GGGSKRREEAPKQPSSSSSNGKIVAVKEKPKKSSSSSSSQGFQNFFKSIVVGPQGKKKTSSRSGSMTGNPVTNVINGLKIHNRNPNQMLSPPTHYQLPKH IPPRRIRRAKHNPNLNRTMRPNNETPWRDIHIHPYRHPNRHPIKLVEPAHVGHRPDHSPRTHEARDGDARSVQVRAPPLPWPTRARRPRARAGRPHCPAD EAVVDTGDGAEESEVMVEGGVEHEARVDRPGRVDGSGPKIEGGGSGELVVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011017 [exp]	0	1
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	2.2	0.8738
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	3.7	0.8679
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	3.9	0.8514
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	4.0	0.8348
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	5.7	0.8182
					Lus10020900 [exp]	5.9	0.8466
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	6.0	0.8577
					Lus10014515 [exp]	7.1	0.8606
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	7.3	0.8511
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	8.2	0.8010

Compare expression of checked genes

Lus10011017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.