Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19170 392 / 9e-126 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 376 / 9e-120 PA-domain containing subtilase family protein (.1) AT1G62340 369 / 8e-117 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT5G44530 356 / 7e-112 Subtilase family protein (.1) AT4G20430 348 / 6e-109 Subtilase family protein (.1.2) AT1G30600 341 / 3e-106 Subtilase family protein (.1) AT4G34980 171 / 1e-44 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 170 / 2e-44 Subtilase family protein (.1) AT5G51750 164 / 2e-42 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 164 / 2e-42 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001006 [exp] 929 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 838 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 837 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10006973 [exp] 375 / 4e-119 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001310 [exp] 374 / 5e-119 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 360 / 2e-113 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 356 / 1e-111 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10015559 [exp] 355 / 1e-111 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 202 / 4e-55 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151100 [exp] 766 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 384 / 1e-122 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.006G076200 [exp] 379 / 7e-121 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G155400 [exp] 362 / 5e-114 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.001G440300 [exp] 361 / 1e-113 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.014G074600 [exp] 179 / 2e-47 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.011G010700 [exp] 174 / 6e-47 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.012G131500 [exp] 176 / 2e-46 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 174 / 5e-46 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 174 / 9e-46 AT5G67360 994 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10011018 pacid=23148621 polypeptide=Lus10011018 locus=Lus10011018.g ID=Lus10011018.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTTCCTGCATTTGATTTCTTCGTATCATTCTTCGTCATTATTTTCAACATTTCCTCAGTTGAATCCAAAGTTTTCATGATTCTAATGGAAG AGGACCCTGTTTGGTCTGTCAAGTCCAATGCTTCTCATCCCAGGATTGAGGAGGTGGCCATGGCGTACAAACAGCGGCTGACGATCAACCACGACATATT CTTGGAATCTACTCTGAAACACAATTACACCAAGCTGTATAGCTATACCCATCTGCTGAATGGATTCGCCATCCATGTCGAGTCCAACGAGGTCATCAGC AGTCTCAAGGGGGCAACAGGAGTAAGAGCTGTACATGAAGACATCAAAATGCAGAAGCTAACAACGCACACTCCTGACTTCCTCGGGATATCTACCAGCG TGTGGCCGTCTTTAGGAGGTGCAGAACACTCCGGTGACGGAGTCGTGATAGGTCTGATTGACACAGGCATCAACCCTTTGCACCCGAGTTTCGCGTCGTC CACGAGGGTCAACAGTACCACCACGACGAAGTTCCGAGGGAAATGCGTCACCGGAGCTCACTTTCCTTCCTCGTCTTGCAACGGGAAGATAGTAGGGGCA CGGTACTTCGCTCGTGCTGCTACCGTCGCCGGTGATTTCAACGCTACCCGTGATTACATGTCTCCTTTCGATGCTGATGGTCATGGAAGGCAAGTATGGT TAACAGACTTTCAATTGTTACTCTTAGTTTGTATTTTCTCTGTATATCCTCGCGGGAGCCACACTGCTTCTACAGCTGCGGGAAACCATCAGATACCAGT GATAGTCAATGGCTTCAACTATGGTAATGCAAGTGGCATGGCTCCTGGGGCTAGGATCGCCGTGTACAAAGCTCTGTACACCTTTGGTGGTTACATGTCC GATGTTGTTGCGGCAGTCGATCAGGCCGTGGAAGATGGAGTAGACATACTAAGCCTCTCCATAGGGCCATCAAGCGTTCCACCTGGTCCTTCTGCTTTCC TCAACGTCCTCGAAATCGCACTCTTGCTCGCGACCAAAGCTGGCGTGTTCGTAGTTCAAGCAGCCGGCAATGGCGGCCCTGCTTCCAGCTCAATCCTTTC CTTCAGTCCTTGGATCACCACCGTCGCAGCATCTATCACCGACCGCCGGTACAACAACACCATCGTCTTGGGGAACGGTCCCAGCGGCTATCCCCGATCG CCGGTACAACAACACCATCGTCTTGGGGAATGGGCTACGCTTCTCCGGCACTGGCCTTGCTCTTCTCCGACTTCCGGAACACTATACCTCCCACTAGCAG CAGCCGCCGACGTCTCCAACAGGAACACAACCAGTGCCATCGAGGTAGAAAGCTGCCAACACCCGGAACACTTCATCCCATCGTCGGCTCGTGGCAAGCT CGTGATCTGCACGTACAACCTTGATTTCGAATCGGAGGCTGCGAGCCTCGCGACCGTTGCGGACACGATACAGAAGGTAGGAGCTGCAGGGTTCATAATC ACCATGGATCCCACCATTGGGTCTGAGCAAGTGAAAGGCACCACTTTGACGTTGAAGGTTCCTGCTATTGTCCTCAACAACATGCAAGCCTCTTCGGCTC TATGGGAGTACTACAACGCGAAAACCAGAAGGTGGAGGAACGGGGAAGTCATGGCGTTCATGGCGGCGGCGAGAATACTCGGCGGCAGAGAAGCGTTCTT CACCGGACAGGCGCCGGTGGTGGCTTCGTATTCGTCGAGAGGCCCCGACGTTAACAATGCGCTGTTGCAGACTGCTGACGTGCTCAAGCCGAACATCATG GCTCCTGGTTCTTCCATCTGGGCTGCTTGGAGCCCCAGCAGTGAAGGAGACCCTTATATAAAAGAACTTTGCACTAGTATCAGGAACAAGCATGGCCACT CCACACATAGCCGGCATCGCAGCTCTAATCAAGCACAAGCACCCGAAATGGAGCCCGGCATCAATCACCTCAGCAATGATGACAACCGCCAATAG
AA sequence Show only first row Show all	>Lus10011018 pacid=23148621 polypeptide=Lus10011018 locus=Lus10011018.g ID=Lus10011018.BGIv1.0 annot-version=v1.0 MASFPAFDFFVSFFVIIFNISSVESKVFMILMEEDPVWSVKSNASHPRIEEVAMAYKQRLTINHDIFLESTLKHNYTKLYSYTHLLNGFAIHVESNEVIS SLKGATGVRAVHEDIKMQKLTTHTPDFLGISTSVWPSLGGAEHSGDGVVIGLIDTGINPLHPSFASSTRVNSTTTTKFRGKCVTGAHFPSSSCNGKIVGA RYFARAATVAGDFNATRDYMSPFDADGHGRQVWLTDFQLLLLVCIFSVYPRGSHTASTAAGNHQIPVIVNGFNYGNASGMAPGARIAVYKALYTFGGYMS DVVAAVDQAVEDGVDILSLSIGPSSVPPGPSAFLNVLEIALLLATKAGVFVVQAAGNGGPASSSILSFSPWITTVAASITDRRYNNTIVLGNGPSGYPRS PVQQHHRLGEWATLLRHWPCSSPTSGTLYLPLAAAADVSNRNTTSAIEVESCQHPEHFIPSSARGKLVICTYNLDFESEAASLATVADTIQKVGAAGFII TMDPTIGSEQVKGTTLTLKVPAIVLNNMQASSALWEYYNAKTRRWRNGEVMAFMAAARILGGREAFFTGQAPVVASYSSRGPDVNNALLQTADVLKPNIM APGSSIWAAWSPSSEGDPYIKELCTSIRNKHGHSTHSRHRSSNQAQAPEMEPGINHLSNDDNRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	2.2	0.8156
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	5.7	0.7601
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	6.7	0.7637
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	7.9	0.7681
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	10.0	0.7596
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	10.2	0.7543
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	11.5	0.6945
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	11.5	0.7578
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	12.4	0.7317
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	13.4	0.7327

Compare expression of checked genes

Lus10011018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.