Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17610 1560 / 0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001005 [exp] 3101 / 0 AT4G17610 1782 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10040145 [exp] 107 / 9e-26 ND 40 / 4e-04 Lus10000961 [exp] 106 / 1e-25 ND 39 / 5e-04 Lus10007598 [exp] 77 / 2e-15 ND 42 / 2e-04 Lus10027768 [exp] 66 / 1e-11 ND / Lus10035527 [exp] 62 / 5e-10 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150900 [exp] 1962 / 0 AT4G17610 1934 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.005G022400 [exp] 62 / 2e-10 ND / Potri.005G022300 [exp] 62 / 2e-10 ND / Potri.005G022250 [exp] 61 / 5e-10 ND / Potri.013G012800 [exp] 52 / 6e-07 ND / Potri.013G012733 [exp] 47 / 3e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10011019 pacid=23148664 polypeptide=Lus10011019 locus=Lus10011019.g ID=Lus10011019.BGIv1.0 annot-version=v1.0 ATGGCCCAAGCCAAGGACATCAACGCGCTGGCCTCCGCCGCGATGGACAAGGCGCGGCGGCAGACGGTGGTGCTGAGCAAGCTCTTCGCCGAGATGCAGA TCAAGCACCACAATCCGCAGATGCGGGCGGCTTACAAGATGTGCGCGTTCGACTTCGCCGACGCGATGATGTTCTTCAACGCTGACGGGCTATGGGACAT GACGAAGAGCTTGGATGTCCACTCGGCGCTCGACGATTTCCAGAACTGCGAGTCAATGTTGACTGCCAACAGCGGCAGCGGCTCCGCCGTGAAGGAGCTG AGGAAGATGGATCCGGCGTTGAAGAAGTGGAGGCATCTGTATTCGATTGCCAATGGGGCTATTTTGTATGCGGAGGCGCAGCCCGGCCACCATGGGTCGG CGGATGATGGTGGGCCCGGGGATTATCCTAAGCCTACCGGCCCATCTGTCGTTTCCCGCCAACCCGGCCCGTTAAAGCCGCAGTGTTTGGCGGGTCTTTT CATTTTCCGCCAAACTCTTAGGGTTTACGAGCTCTCACTCCAATCTTTTCAAACTTTAAAAAAACAAAAAAAATCATTTTCCTCCCTTCCTCTTCCTCAT CTTTACCAGCATTCGGAGGAGCTGAGAATCAAATCACCATTTCCGCATCCAGAGACCGAGCTAGCGAAGCGAGTGGACGAAGGATCCAATGGAGGAGTCC TCCTTAGTCTCATCTCTGTCAACCAGCTTCAAGGATGTCCCGTTGGCAGCTATACCGCCCATGCTCGACTGCATTCTCGCTTCCACTCGCTTGTCTCCGT CTTCGCTCTTCTCCGCGCTTCTGGATTCTTCTTCGGCACTTCTCGTCGAGGTAACGTTTCTGTCTCTGCTGGTTGCGGAGTAGAACGCTTGCGTTTGACT GTTCACTGGATTCTGCTGCTCTGTCATGATAATACGCTCCAGGGCCAGGAGTTGGGCCCTGACCAGTGTAATGATGTTGCATCATTGGCCACTGCACTTT GTTATCTACTGAAAAAGTTTGGGGCTGATTCTCCATGTCTGCGGCCTTTTGTATGGAGATGTTTTATTCCCTTGCTGAGAGCTAATGCATTTGACCGTGT TTTGCTTAATGAGATTGCTGAATCTTTCCTCAATGTCGTGACCACGACTAGTTCCTGGACCACTCTAGAGACAACTGTGGTGCCGTTTCTTTTGAGATCT GTTGGTGTTTCTATGGGCATGCTTCAACAAGCAGAATCAGATGCCTTTAAATGGGAGGATTCCTCTGTTTTCCAGAATGCAGATGACATGGTAGTTGGCA TCGATCATGACAAAGATTACGCCCTTCCTTCAATCTTCAAGTGTATCGCGTTGCCCATGTCCTGCTATATTCTGACTCTGGTGCTGGATGCGGCTATAAG AAGTTTCAAGCTATCACCAACAGAGAAAAGAATGCCTGGCTGCTGTGGTTGGGAAAAACTATCTGGTAATTTGCTTTGGGATCTCTGCTGCATGAGCGAG CGGTTGCTTTTACAAAGTTCAGACCATCGGTCATGTGCTATTTCTATTCTTCTTCCAAATATTTGCAAAGCATTCACCCGTGGAGTCTCGTTTGATATAT CTATTCATGAAAGCAGCTTTAGTCTAACCAGAAACCTTTTCCTTGGGAAGATTTGGCAGTGCTGCAAAACACTATTTTCCCTTGGATCATCAGAGAGAAG GGATGCATATAGTATGCTCTCTATTTGCTCATCCTTTTTCTGGGAAGAAAGTGATATTACAGATTCTAGTGTTAGAGCAGAAGAATTTGACGTGAGGGCT GACCGACAGTTTTGGGAGGAAATAAAAAGCGGCCTGGTTGAAGATGAACGCTTGATTAGGAAGCAATCACTTGAAATACTGAAAAATGCACTCCACATAA ATGAAGATTTAAACAGTTCAAGTGTTTTGGAGATGTTGCCTCATGGCGATCTTTCCAATTCTCAAGGTTTGACAAAGAGGGAATCGTGGGCTGACAAGGA AGCTAAATCTCTGGGTGTTGGGAAATTCTGCAGTTCAGTTGATTCCCCATTGACCTATCAGCAACAATGGAAAGCTTTTATACTTCTATATGAAATGCTT GAAGAGTATGGTACTCATTTGGTGGAAGCTGCTTGGAATCACCAGGTTACGTTGTTACTTCAGTTTTCTTCTTCAGACAACAATTTTGGCAACACTTCAT ATGGAATTCATCAACATCAGACTGAAACTACACGGGAAAGTTTCGCTTGGTTAGCAATTTTGTGGGTAGTAGGATTTCGTCATGATAATCCTCAAGTCCG GTGCTTGATCATGCAGTCATTTTTGACCATTGACTGGATAAAGTATGGAGAGACAGCTCGATCTCTACCAGAAAGATTCGTTCTCGGACCATTCATTGAT GGACTGAATGATCCTATCCACCACAAAGAATTTGGTATGAAAGGGGTTTACACTTCAAAGACAGTCATTGCAGCTGGCGACTTTATATGTCATTATATGA GTTCCCTGAGTGTAAGAGACGGAGTAGCCCTTATAATTGCTCTGGCATCAGCTGTTAAACATCGGTCCATTGGCCGAGCTGGATTGATGGGTCTAGCAGA ATGTCTTGCATCTGCTGCTCGTGGATTAGAAAAATGTAAATGCAGCGAGATACACCATAATGCGCCTGATCTCACTGAAGAGTCTCAAACAGAAACATCC CTTGATTTTTTTTCTTCCAATGACAAATCAGAGTTACTGGAAGTATTGAGGTTTGTTTTGGAGACTAGCAGACAACACTTCAACCCAAATTATCGTCTTC GAGTGACCATGAAAATTTTTGAGGCTGCTGCATCCTTGGTCGGCATCTCTGAAGTGCCTCTTGAGATTGCATTGCGATTCATTTCAGCATTTCCAAGGGA GTTTACAGATCATGGGGGAGTCTTCATAGCAACAACACAAGAATGGCTTCTGGGGTCTTCCACTGAACACGAGAGAACCAGTAACTACACCACTGGGTTT CAGCTTCTGAAAAGCCTTCAGGAATTCCCCTTGAAGTTTATAAGTCGGCAATCTTCAGCTGATGCTGTCCTTACTTACGATGATGAAGACTTGAAGGCAT GGGAGGCTGAAGCCAAAAGATGGGCGAGGGTTCTTTTCACTGTGGTCAGAGGGGAAGCTGAATTAGAACCTGTGTTTACGTCTATTCATGATCTTGCCGT TAGCATCTGCAAGCAGCAAAATATACTAGGTTGGCTGCCCGTAAAATATCTTGTCGTTAGCATGAGCCTGATTTCGGAGATTCAATTGGTGGAGGAGAGG GCTGGTGAAAATTGCATCGGAATGACAGAAGATTCCGTCGGAAGTTTGGCAATGACCAGAAGGCTTTCTGCTCAGTTTATGCTTGTATTGGAGGAGCTTG TATCTTTTGCCAACATGTATTGTCCTATATTTTGGGCCAACCTCGGAGAGGATGTAGCTTTGCCTGGAACTGTTAGAGGAAGGCTTGGGGGTCCTAGTCA ACGTCGTTTGGCATCAGTTACAACCACTGCAGTACTACAAGCTATAACGTCAGTGCAAGCTGTTGCTTCAGTTTCAACATGGTGTATTAAATCAAAGAGT GCTGAGCTGAACTCTTCTTGGATGTCTCAGTGGAGCTTCTTCAGGAGAGTTATATCAAGTCCAGCCCACAAAACAGAGACAGGAGCTGAAGTTAGCATAG CAGCATATGAGGCATTATCCTATGCTTTGAAAGCATTGGCATCCACATTTTCTAAGTACTCCTTGAATGTTATCAGGGACAGCAACAGATCTTTGCACTT GCAAGAAGATGAACCATTATTAGATGTGATGGTTCTCTCCTTCCTTGACAATGTCAATAATCTTCTTGCTGTTGGAGCACTAGCGCGATCTCGAAGGGCA GTATTATTGAAATGCAAGTGGCTCTGTCTAGAATCTCTGCTCTCTATTCCTGGTTATGCTCTGGGTAACGGGCTTCAAATTGAGGATGCTAGCTTCTTCT CAGATAGAGCTATAAAGTCCATTTTTGATGACCTAGTTGAAAGCCTGGAAAATGCTGCAGAAGTTTCTCTTTTGCCCATGCTGAGGTGCGTCAGGTTGGC TATTCGACTGCTTGCTTCAGGGAAGTTGGACTCACTAACTGGTGTCGATGTCCAGATGATGTGGCCTTTGGTCCGTTCTTCCTGGGTATTGCTTGTCAAC TGGAACAAGCGGAGGGTTGCATCCATCGCTGCAGTTCTGTCATCTGTCCTGCATGCTTCTGTGTTTGCTGATGAGGCGATGCACATGAATAACAATAGCC CTGGTCCTTTGAAATGGGTGCGTGAACCTCTTTCCTCCTCTGCATCTAATTTTCTTTATCAACAATCTACTCGAGGAAGGTACAAGAAGTCCACGCACGA TTCGTCTTGCAGCGTTGCATCTAACAGGGCTCTGGCTCTCTCATCCACGGATATGCATGTACTACATCAAAGAACTGAAGTTGCTAACGCTATATGGCTC CGGCATGTAACTTGCTTACTTGCCTTCGATGAGGACTTTGAAGCCGAGTTGGTTGAAAATTATGAGGCAAGGACTGAAGTTTCGTTCTTGGCTAACAACC CAAACCCTGAGCTAACTGAAGCATTTATCAACACGGAGTTATATGCTCGTGTATCTGTGGCTGCACTTTTTCAAAAATTAGGTGAGTTGGCTGATTTAGT GGGCACATCATATGAAAATGAAGAATGTCATTCTGCTCTTGGAGCTGGCAAGTTGTTTCTCTTGGAACTCCTCGATTCAGCGGTCAATGATAGAGACATT GCAAAAGAACTGTACAAGAAATATAGTGCGATCCATAGGCGTAAAATACGTGTTTGGCAAATGATATGTGTTCTTTCTCGTTTTGTCACTGGAGATATTG TTGACGAAGTTACAAAGAGTATGCATGTTGCTCTTTGTGTGGGGAAACAACTAGTTCCTGTTTTACAGGACTATGACATGAGGCCTCAGGCGCTTTCGTC CTATGTGTTCATAGCAGCAAATATCATTCTCCATTCCTCTACACCACTCAAATCGATGCATTTGGACGAGTTACTTCCTCCAATAATCCCATTGTTGACA TCACATCACCACAGCCTGAGGGGTTTTACTCAGTTGCTAGTCTACCAGGTTCTCTGTAGATATTTTTCCTATTTAGACAGTGGAACTGATGATACACAGT TAGAGAAGAGGTGCTTTAAAGACTTAAAGCTGTATCTAGCTGAAAATCCTGACTGTAAGCGTTTACGGGAGTCAATGGAGGGATATCTAGACGCCTATGA TCCCATCACCTCCTCTACACCTGCTGGAATTTTCGTCAATCGAGTTGAGAAACTAGAATTTGAATGTGTTCCCACGTCGCTCATGGAGGAACTGCTCGGC TTTCTAAATGATGCTAGGGAGGATCTTAGGTCTGCAATGGCAAAGGATCTCGTGGCTATTAAGAATGAGAGCCTAAAAACTTATGGAAATCCTGATTCTG CGCCACTTCCAAATTCCAGCATGTCTAATAATGACACATTGGATTTTCAGAAAAAGATTACTCTGTCTACACACGAAAAGGAGGGAACAAACTACGGTAC AAGTTTGGGAAATGATAAAGGTCAGAAACAACTGCTAGAAATGGAAAAGGAAACCGAGCTTCTTGATCAGGCAGTCGAATCAAGAAGGTCGGCCATAAAA AGTATAACAGGAGGACGCCAACAATTTATTGTTGTAGCTTCCTTTCTCGATCGAATACCGAATCTTGCTGGATTAGCAAGGACTTGTGAGATATTTAAAG CCTCTGGGCTAGTCATTGCAGACACAACTGTTTTACGTGACAAGCAATTCCAGCTGATAAGTGTGACAGCGGAGAAATGGGTTCCAATTATGGAAGTGCC AGTAAACAGCGTGAAACAATTCCTCGAGAAGAAAAAACGAGAAGGCTTCTCTTTGCTCGGATTAGAGCAAACTGCAAATAGCACGCCACTTGATCAGCTT GAGTTCCCCAAAAAGACAGTCTTGGTTCTAGGGCGTGAAAAGGAGGGTATACCAGTGGATATAATCCATGTACTAGATGCTTGTGTAGAGATTCCTCAGT TAGGAGTCGTTAGATCGCTCAATGTTCATGTCAGCGGTGCCATCGCTCTCTGGGAGTATACTCGACAGCAGAGGTCTCACTAG
AA sequence Show only first row Show all	>Lus10011019 pacid=23148664 polypeptide=Lus10011019 locus=Lus10011019.g ID=Lus10011019.BGIv1.0 annot-version=v1.0 MAQAKDINALASAAMDKARRQTVVLSKLFAEMQIKHHNPQMRAAYKMCAFDFADAMMFFNADGLWDMTKSLDVHSALDDFQNCESMLTANSGSGSAVKEL RKMDPALKKWRHLYSIANGAILYAEAQPGHHGSADDGGPGDYPKPTGPSVVSRQPGPLKPQCLAGLFIFRQTLRVYELSLQSFQTLKKQKKSFSSLPLPH LYQHSEELRIKSPFPHPETELAKRVDEGSNGGVLLSLISVNQLQGCPVGSYTAHARLHSRFHSLVSVFALLRASGFFFGTSRRGNVSVSAGCGVERLRLT VHWILLLCHDNTLQGQELGPDQCNDVASLATALCYLLKKFGADSPCLRPFVWRCFIPLLRANAFDRVLLNEIAESFLNVVTTTSSWTTLETTVVPFLLRS VGVSMGMLQQAESDAFKWEDSSVFQNADDMVVGIDHDKDYALPSIFKCIALPMSCYILTLVLDAAIRSFKLSPTEKRMPGCCGWEKLSGNLLWDLCCMSE RLLLQSSDHRSCAISILLPNICKAFTRGVSFDISIHESSFSLTRNLFLGKIWQCCKTLFSLGSSERRDAYSMLSICSSFFWEESDITDSSVRAEEFDVRA DRQFWEEIKSGLVEDERLIRKQSLEILKNALHINEDLNSSSVLEMLPHGDLSNSQGLTKRESWADKEAKSLGVGKFCSSVDSPLTYQQQWKAFILLYEML EEYGTHLVEAAWNHQVTLLLQFSSSDNNFGNTSYGIHQHQTETTRESFAWLAILWVVGFRHDNPQVRCLIMQSFLTIDWIKYGETARSLPERFVLGPFID GLNDPIHHKEFGMKGVYTSKTVIAAGDFICHYMSSLSVRDGVALIIALASAVKHRSIGRAGLMGLAECLASAARGLEKCKCSEIHHNAPDLTEESQTETS LDFFSSNDKSELLEVLRFVLETSRQHFNPNYRLRVTMKIFEAAASLVGISEVPLEIALRFISAFPREFTDHGGVFIATTQEWLLGSSTEHERTSNYTTGF QLLKSLQEFPLKFISRQSSADAVLTYDDEDLKAWEAEAKRWARVLFTVVRGEAELEPVFTSIHDLAVSICKQQNILGWLPVKYLVVSMSLISEIQLVEER AGENCIGMTEDSVGSLAMTRRLSAQFMLVLEELVSFANMYCPIFWANLGEDVALPGTVRGRLGGPSQRRLASVTTTAVLQAITSVQAVASVSTWCIKSKS AELNSSWMSQWSFFRRVISSPAHKTETGAEVSIAAYEALSYALKALASTFSKYSLNVIRDSNRSLHLQEDEPLLDVMVLSFLDNVNNLLAVGALARSRRA VLLKCKWLCLESLLSIPGYALGNGLQIEDASFFSDRAIKSIFDDLVESLENAAEVSLLPMLRCVRLAIRLLASGKLDSLTGVDVQMMWPLVRSSWVLLVN WNKRRVASIAAVLSSVLHASVFADEAMHMNNNSPGPLKWVREPLSSSASNFLYQQSTRGRYKKSTHDSSCSVASNRALALSSTDMHVLHQRTEVANAIWL RHVTCLLAFDEDFEAELVENYEARTEVSFLANNPNPELTEAFINTELYARVSVAALFQKLGELADLVGTSYENEECHSALGAGKLFLLELLDSAVNDRDI AKELYKKYSAIHRRKIRVWQMICVLSRFVTGDIVDEVTKSMHVALCVGKQLVPVLQDYDMRPQALSSYVFIAANIILHSSTPLKSMHLDELLPPIIPLLT SHHHSLRGFTQLLVYQVLCRYFSYLDSGTDDTQLEKRCFKDLKLYLAENPDCKRLRESMEGYLDAYDPITSSTPAGIFVNRVEKLEFECVPTSLMEELLG FLNDAREDLRSAMAKDLVAIKNESLKTYGNPDSAPLPNSSMSNNDTLDFQKKITLSTHEKEGTNYGTSLGNDKGQKQLLEMEKETELLDQAVESRRSAIK SITGGRQQFIVVASFLDRIPNLAGLARTCEIFKASGLVIADTTVLRDKQFQLISVTAEKWVPIMEVPVNSVKQFLEKKKREGFSLLGLEQTANSTPLDQL EFPKKTVLVLGREKEGIPVDIIHVLDACVEIPQLGVVRSLNVHVSGAIALWEYTRQQRSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	0	1
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	1.0	0.9458
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	2.8	0.9369
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	2.8	0.9235
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	3.7	0.9448
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	4.5	0.9195
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	5.0	0.8969
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	5.5	0.9380
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	10.1	0.9086
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	10.6	0.9129
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	11.3	0.8796

Compare expression of checked genes

Lus10011019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.