Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44730 112 / 5e-28 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 71 / 2e-13 Trihelix Homeodomain-like superfamily protein (.1) AT3G54390 61 / 2e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G58630 57 / 4e-09 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 57 / 1e-08 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT4G17060 55 / 3e-08 FIP2 FRIGIDA interacting protein 2 (.1) AT3G10030 54 / 1e-07 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT5G05550 42 / 0.0005 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 41 / 0.0007 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000963 [exp] 284 / 3e-93 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 283 / 4e-93 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10001004 [exp] 266 / 7e-88 AT4G17060 80 / 4e-17 FRIGIDA interacting protein 2 (.1) Lus10022789 [exp] 73 / 3e-14 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10011851 [exp] 73 / 3e-14 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10015282 [exp] 68 / 2e-13 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 67 / 2e-12 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 67 / 3e-12 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 66 / 1e-11 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083800 [exp] 161 / 4e-45 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 152 / 5e-42 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 110 / 2e-27 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 110 / 4e-27 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G243300 [exp] 79 / 1e-16 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.001G113600 [exp] 69 / 5e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 67 / 2e-12 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 60 / 9e-10 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 59 / 2e-09 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 51 / 6e-07 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011020 pacid=23148686 polypeptide=Lus10011020 locus=Lus10011020.g ID=Lus10011020.BGIv1.0 annot-version=v1.0 ATGTCTTCCCCCGCCGCCTCCGCCTCCACCGCCACTGCCGCCGCAGCGGCAGACCCTTCCAGCCGGAAGGTCCCGCCACCGTGCTGGACGACGGAGGAGA CAGTCGAGCTAATCAAAGCCTACCGAGACAAGTGGTTCGCCGCCAACCGGGGCAACCTCCGCGCCGCCGACTGGGACGCCGTTGCTTCATCGCTCGCCGA CTCCCCTTCCTCCTCCGATCCGCCGAAGACCGTCGTTCAGTGCCGCCACAAGATCGAGAAGATCCGGAAGCGGTACCGCGGCGAGAAGCAGCGGTGCCTA AAATTTCCAGGTCGGTTCTTTTCCTCTTGGGATCTTTTCCCTATCTTAGATGCCATGGAGATTGGGTCCATCGGATCCAAACAAGAACAGGACGATCCTT CTCCTGTCTTAGTCGCCGCCGCTGATAGTGCTCACAACGGTCTAGATCCTGATATGGATTTTGATCCGGATTCATCCTTTAGGGCTAGGAAATTCAGCAA GATGAGCAATAATAATAATCATAACTATCACAGTTACAGCAATGGAGGTTACGACGAGTCTCTCGAATTCACTCAGAATTCTGTCAACGTAGCGTTGATG CCTAAGAGTTACGGTAGGTCTGATAGGAAACCTAGGAGATTACCGCAGATGGATGATTCGAGGGACGAAAGATACAGGCCGGGGAAGAGAGCTGTTGATG AATGGGCGAACAACAACAACAATAATGTATCGTCATCATCGAGGATTCGAGTTAAGAATCCTGCTACTTCCTCGAGGAGCTTCGATCAGTTTGCGAATGG GAATGCCAATGCCAAGATGAATAATGGTGGTGGAGGAGTTAGTACTAGAGACCCAGTTGCGGAAGTGGTGTCAGCAATCAAGATGCTTAGGGAAGGGTTT GTAATGGTGGAAGAGATGAAGATGAACATGGCAATGGAGATAGAAAAGATGAGGATGGGGATGGAGCTGAAGCATAACCAGATCTTTTTTTTTTTTATAT TTATTACTTTGACCCCCCCCCCCCCCCCCCCCCCCCCTCCTTTTGAATTGAAGAAAGCTACTAAGCTAGGGTTTATGTTTTGA
AA sequence Show only first row Show all	>Lus10011020 pacid=23148686 polypeptide=Lus10011020 locus=Lus10011020.g ID=Lus10011020.BGIv1.0 annot-version=v1.0 MSSPAASASTATAAAAADPSSRKVPPPCWTTEETVELIKAYRDKWFAANRGNLRAADWDAVASSLADSPSSSDPPKTVVQCRHKIEKIRKRYRGEKQRCL KFPGRFFSSWDLFPILDAMEIGSIGSKQEQDDPSPVLVAAADSAHNGLDPDMDFDPDSSFRARKFSKMSNNNNHNYHSYSNGGYDESLEFTQNSVNVALM PKSYGRSDRKPRRLPQMDDSRDERYRPGKRAVDEWANNNNNNVSSSSRIRVKNPATSSRSFDQFANGNANAKMNNGGGGVSTRDPVAEVVSAIKMLREGF VMVEEMKMNMAMEIEKMRMGMELKHNQIFFFFIFITLTPPPPPPPPPFELKKATKLGFMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	5.8	0.8550
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	6.0	0.8553
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	8.7	0.8368
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	9.3	0.8429
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	10.1	0.8270
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	11.8	0.8207
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	12.4	0.8153
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	15.0	0.8293
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	20.7	0.8128
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	20.7	0.7742

Compare expression of checked genes

Lus10011020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.