Plant FIBer expression Database

Lus10011021 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37030 585 / 0 unknown protein
AT4G12680 365 / 1e-119 unknown protein
AT5G40640 331 / 3e-106 unknown protein
AT3G27390 324 / 1e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001003
[exp]
977 / 0 AT4G37030 707 / 0.0 unknown protein
Lus10016056
[exp]
351 / 9e-114 AT4G12680 749 / 0.0 unknown protein
Lus10032110
[exp]
337 / 1e-108 AT3G27390 728 / 0.0 unknown protein
Lus10025177
[exp]
336 / 9e-108 AT4G12680 738 / 0.0 unknown protein
Lus10014575
[exp]
329 / 2e-104 AT5G40640 714 / 0.0 unknown protein
Lus10022317
[exp]
315 / 4e-100 AT3G27390 722 / 0.0 unknown protein
Lus10014881
[exp]
171 / 6e-48 AT3G27390 380 / 3e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G042400
[exp]
641 / 0 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
325 / 4e-104 AT4G12680 411 / 9e-138 unknown protein
Potri.001G338900
[exp]
321 / 3e-102 AT5G40640 718 / 0.0 unknown protein
Potri.014G170800
[exp]
303 / 1e-95 AT4G12680 685 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10011021 pacid=23148696 polypeptide=Lus10011021 locus=Lus10011021.g ID=Lus10011021.BGIv1.0 annot-version=v1.0
ATGGCTGAATCAAACTTTGCAAACACCATTCTCCGATGTTGTTTGACCATCCTCTACGTGGTCTTCGCCTTCTCTGCTGCTCTGATTCTTGGTGCTATCA
AAGCTGTGGTTGTGGGGCCAATTGCAGCTTCAATCTTGATCATAGGGAACTTAGGGGTGATTCTTGGGTTGTTCCCTTACCATGTAGTGTGGACCATCTA
CAGCCTTTCCATAACGAATAGATTTGACATACTGCTGAAAGCAGCGCTGTTATTAGTGCTCCCAGCATTGGCTGCTCTGTGGCTGGGTTTAAGCATTGCT
GTGACGATTCTTGCTGGTCTGGGTTATGGATTCTTCACTCCTTGCATCTCGACTTTTGAGGCCTTCAGGCACTGCGATGGCTCCAAGAAACTAAGCCACA
TTTTTACGGATGGAACATGGGACACAATTCGGGGAAGCTGCACTGTGGTCAGGGATTCTGTTGATATGTGCTACCACTCTTACTCGATCTACATGAAGGA
GCTTCGTGATTCTCCTCCCTGCGACCAGCTACGAACTCTTAGGCTGCTTCATCTGCCAGGATTCATAATAGCAGGTTTGCTTGGTCTGATAATAGACATC
CCTCTGTTCACGATAATTGCTGTGGTGAAGAGTCCATACATGCTGTTCAAAGGATGGTTTAGGCTGGTACACGATCTTATCAGCCGAGAAGGTCCGTTCC
TCGAAACAGCATGCATACCTGTTGCTGGTTTGACCATCTTTCTCTGGCCGCTTGCTGTTGCTGGGAGCATAGTTATGGCCATTTTCTCCAGCTTCGTCAT
CGGGCTCTACGCTTCGGTTGTGGTTTATCAGGAGAAGTCATTCTGGAGAGGTGTTGCATATGTCATTGCCATGGTTGCTGAGTTCGACGAGTATACAAAT
GACTGGCTTTATCTCAGAGATGGCACTTTCCTGCCCAAGCCCCGGTACCGGAAGAAAAAGGCTCATTCATCATCTGAGCTTTCAGTTGGAGGGAGTACTC
GATCGAAGCGTAATTCTGCAATGTCAGTAGCCCCTGCAATGCTTGTTCCCAGCTTAGCTCCTTCAAGATCAGTCAGGGAGACCATTCAGGAAGTCAAAAT
GATTCAGGTGTGGGAGCACATTATGAGGACATGCGAGACAAGAGGCAAAGAGCTACTTGACAGCGAAGCCATAAAGCAAAGTGACCTCACAGACTGGCTA
AAGCCAAGGAACGTCAACAACAGTGGAGCCGTGATAGGCGTGGGATTGCCTTGCTATACGTTGTTGCTGACACTTATGACCTCGATTCGAGCAGGGTCAG
ATGGGTTCTTACTCTACGACGGCGTAGAGTTGACCCATTTGAACCGCCCGAACGACTTGCTGCTCGACTGGTTCTTCCAACCGTTGCTCCTGCTCAAAGA
ACAGATCAAGGCCATTAACTTGGAAGATGGAGAAGAGAAGTTCCTGCATAAGTTGGTATTGTTCAGCAACGATACTCAGCGGATGGATGGGTGGGAGAAT
GGGAGTGTGGTTCCTGTTGATGCTATGAGAAGTGCTCAACTCGAAGGGATCGGCAGAAGGATGATGGGGATGTCGAGGAGTGTGTCCAAGTATCCTACTT
ATAGGAGGAGATACAGGCAAGTGGTGAAGGCATTGGTTGCTTATTCATCATCATCAGGAGCAGATAATCAAAGTACTGGGAGATCCGGTTCGATTCGGTC
GATAGCTTCAGTTGAACAAGTTTGA
AA sequence
>Lus10011021 pacid=23148696 polypeptide=Lus10011021 locus=Lus10011021.g ID=Lus10011021.BGIv1.0 annot-version=v1.0
MAESNFANTILRCCLTILYVVFAFSAALILGAIKAVVVGPIAASILIIGNLGVILGLFPYHVVWTIYSLSITNRFDILLKAALLLVLPALAALWLGLSIA
VTILAGLGYGFFTPCISTFEAFRHCDGSKKLSHIFTDGTWDTIRGSCTVVRDSVDMCYHSYSIYMKELRDSPPCDQLRTLRLLHLPGFIIAGLLGLIIDI
PLFTIIAVVKSPYMLFKGWFRLVHDLISREGPFLETACIPVAGLTIFLWPLAVAGSIVMAIFSSFVIGLYASVVVYQEKSFWRGVAYVIAMVAEFDEYTN
DWLYLRDGTFLPKPRYRKKKAHSSSELSVGGSTRSKRNSAMSVAPAMLVPSLAPSRSVRETIQEVKMIQVWEHIMRTCETRGKELLDSEAIKQSDLTDWL
KPRNVNNSGAVIGVGLPCYTLLLTLMTSIRAGSDGFLLYDGVELTHLNRPNDLLLDWFFQPLLLLKEQIKAINLEDGEEKFLHKLVLFSNDTQRMDGWEN
GSVVPVDAMRSAQLEGIGRRMMGMSRSVSKYPTYRRRYRQVVKALVAYSSSSGADNQSTGRSGSIRSIASVEQV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37030 unknown protein Lus10011021
[exp]
0 1
AT3G18820 RAB71, AtRABG3f... RAB GTPase homolog G3F (.1) Lus10040468
[exp]
1.0 0.9374
AT3G17810 PYD1 pyrimidine 1 (.1) Lus10041990
[exp]
2.4 0.8962
AT2G21120 Protein of unknown function (D... Lus10012716
[exp]
2.8 0.9301
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10019259
[exp]
3.2 0.9090
AT3G55770 LIM WLIM2b WLIM2b, GATA type zinc finger ... Lus10034123
[exp]
3.5 0.9153
Lus10025501
[exp]
5.2 0.9258
AT2G26040 RCAR14, PYL2 regulatory components of ABA r... Lus10026430
[exp]
9.2 0.8819
AT1G72510 Protein of unknown function (D... Lus10037683
[exp]
10.4 0.8762
AT2G21120 Protein of unknown function (D... Lus10010893
[exp]
11.3 0.8933
AT4G36380 ROT3 ROTUNDIFOLIA 3, Cytochrome P45... Lus10041794
[exp]
13.3 0.8855

Lus10011021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.