Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33510 658 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) AT1G22410 652 / 0 Class-II DAHP synthetase family protein (.1) AT4G39980 637 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001002 [exp] 786 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10000636 [exp] 644 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 635 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 630 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 628 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150500 [exp] 723 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Potri.005G162800 [exp] 661 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.005G073300 [exp] 656 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.002G099200 [exp] 656 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 602 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10011022 pacid=23148658 polypeptide=Lus10011022 locus=Lus10011022.g ID=Lus10011022.BGIv1.0 annot-version=v1.0 ATGGGCGTCGTTCTTACTTTTGGTGCTCAGATGCCTATCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCGAAACCTAGGTCGGATTCCTTTGAGGAAA AGGACGGTGTGAAGCTCCCGAGCTACAGAGGAGATAACATCAATGGCGATGCATTTGACGAGAAGACTAGAAAGCCTGATCCTCAGAGGCTCATCAGAGC TTACCTTCAGTCTGTTGGAACATTGAACCTTCTAAGAGCTTTTGCCACTGGTGGCTACGCTGCTATCCAGAGAGTTTCTCAGTGGAATCTCGATTTCGTG CAGCACAGTGAGCAAGGAGACAGGTACATGGAACTGGCGAGCAGAGTCGACGATGCCATTGGATTCATGACTGCAGCTGGTCTTACCATAGAACATCCTG TGATGAACACCACCGATTTCTGGACGTCTCATGAGTGCCTTCACTTGCCTTACGAGCAGTCCATGACTAGGGAGGATTCGACCTCCGGTCTCTTCTATGA TTGCTCGGCGCACATGCTGTGGGTTGGTGAGAGGACTCGGCAGCTGGGCGGAGCTCATATCGAGTTTCTCCGAGGCATCTCCAACCCGTTGGGTATCAAG GTGAGTGACAAGATGGACCCGAGTGAGCTTGTGAAGCTGTGCGAGATCCTTAACCCGCACAACAAACCTGGACGACTAACTATCATTACAAGAATGGGAG CAGACAACATGCGAATAAAGCTGCCTCATCTAATCAGAGCTGTCCGACAAGCTGGGTTAATTGTCACCTGGGTCAGTGATCCTATGCATGGCAATACAAT CAAGGCTCCGTGCGGCCTCAAAACTCGAGCATTTGATTCTATTCGGGCCGAGTTAAGGGCGTTCTTCGACGTGCACGACCAGGAAGGAAGCTACCCGGGA GGCGTCCACCTCGAAATGACTGGCCAGAACGTGACCGAGTGTGTCGGAGGATCAAAGACTATAACCTTCGACGACCTGAACTCGTGTTACCACACCCACT GCGACCCTAGGCTGAACGCTTCGCAGTCTCTCGAGCTCGCTTTCGCCATCTCCGAGAGGCTGAGGAAGAAGCGTCTTCGAGCCGGGAGGAGCAACCTCGG CGGTAATGGAAGCAAAGCTAGCGACCCTTTTGAATAA
AA sequence Show only first row Show all	>Lus10011022 pacid=23148658 polypeptide=Lus10011022 locus=Lus10011022.g ID=Lus10011022.BGIv1.0 annot-version=v1.0 MGVVLTFGAQMPIIKVGRMAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDEKTRKPDPQRLIRAYLQSVGTLNLLRAFATGGYAAIQRVSQWNLDFV QHSEQGDRYMELASRVDDAIGFMTAAGLTIEHPVMNTTDFWTSHECLHLPYEQSMTREDSTSGLFYDCSAHMLWVGERTRQLGGAHIEFLRGISNPLGIK VSDKMDPSELVKLCEILNPHNKPGRLTIITRMGADNMRIKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRAFDSIRAELRAFFDVHDQEGSYPG GVHLEMTGQNVTECVGGSKTITFDDLNSCYHTHCDPRLNASQSLELAFAISERLRKKRLRAGRSNLGGNGSKASDPFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	1.4	0.8639
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	1.7	0.8690
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	9.2	0.8355
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	11.7	0.8087
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	12.0	0.8279
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	15.1	0.8292
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	16.0	0.8105
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10020219 [exp]	16.9	0.8038
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	17.3	0.7656
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	19.0	0.8244

Compare expression of checked genes

Lus10011022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.