Plant FIBer expression Database

Lus10011023 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37190 561 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001001
[exp]
874 / 0 AT4G37190 605 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G361900
[exp]
659 / 0 AT4G37190 682 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0566 Tubulin PF10644 Misat_Tub_SegII Misato Segment II tubulin-like domain
Representative CDS sequence
>Lus10011023 pacid=23148682 polypeptide=Lus10011023 locus=Lus10011023.g ID=Lus10011023.BGIv1.0 annot-version=v1.0
ATGAGGGAGATAGTAACTGTCCAAGTCGGAGGATACGCAAACTTCGTCGGCTCTCATTTCTGGAACTTCCAGGATGAACTGCTTGGATTGGTTGATGATC
CTGACAGCGATCCAGCCTTCTTGAATCATCAGCAGTATATAAACATGGATGTCCTATTTCGCACTGGTGAAACCCAGAAGGGAGTCCCTACGTATACTCC
TCGCCTTGTGTCGATTGATTTGCAAGGATCACTTGGTTCCTTGAGCTCACGTGGTTCATTGAGTGGTAGTGTTGTTACTTCTACATCTGAAGTGCACCAG
AGGAACCTGTTCTTGCAAAGTTTGTATCAAGAACCACGTAGAAAAAGTGATAATAAGCAAGGAGAAATCAGCGATAAGGACATTGTTGAATCGTTGGAAA
ATAGTGTCCAGTTTTGGACGGATTTTTTGAAAGTGCACTATCATCCCCGCAGTTTATATGAACTGAGCGGATTGTGGGTGAATTCTCTGGAGTTTGACAA
TTACGGTATTGGGAAAGATGTGTATTCTGAAGGTTTGCGAGGAGAAGAAATCAGCGAGAAGCTTCGGTTTTTTACAGAAGAGAGTGACCATATTCAGGGT
TTCCAATTCATTGCTGATGATTCAGGAGGGTTTTCTGCTCTATCTGCTGATCTTTTGGAGCACATTGCAGATGATTACCCATATATACCTATTCTACTCT
ATACAGTCAGGGCTCCCTCCTCTCCTACAAACAGGAAACAAACAGTTTCGAGGAATATCCACGATGCCGTTTCTTTCTCGAGGCTTTCGTCCCTCTCCAG
ACTAATCGTGCCTCTCGGTCTGCCTTCTTTGAGCACAAGTAAAGCTTGCAAATCTCTCCATGTTAAAGACGAGAAGGCTTACCATACAAGTGCAGTTTAC
GCCGCGGCTATACACTCGATCAGCCTTCCATTGAGAATGGATACGCTCGGTCCAACCGCCGGTTCATCTTATGCTTCCGGAGCTATGGATGTTAACGGCG
TTATACAGATGCTAGCTGGGCAAGCTAGACAAAACCTTGTTGCTATTCTTGACACTGCAATGCCTGCACCTGCTTTAACCGGAAATGTGGTTCAGCCATC
ATTTCTTGCGAATTTGGAGTCGTTGACCTCTGAGATATCAGATGATGCTGAAGATTTACACGCCGTTGAATCCATGGTTGTTCATGGAGCACTCGGATCA
GGAAACCACAGAGCTTCAGTTACAGAAGTGACCGACGCAATAGACGCAGCATACAAGATGCTATCGACAAGGCCGATGTTCAGCCACCTCTCGACTGCTC
GCTGTCCTCTTCCTATACCGTTGCCATTCCCTTCGATTTTCAGACCCCTTATCGGTACACAAGGAGAGCTCCTAACCAATTCAACGGGACCATCATGCTC
TTCATCACTCGAAGTCCACTCCGTCCCCATGGCAGCCAGGCTACGATCGAGTACTGCCATCTTACCGTACTTGGAAAACAGATTGGCGAACCTTCGAAAG
CTCGGCATCACGCGTGGAGCTCCGGGAGGCGAGATCGTTCGAAGCTGGGGGTTTGGGAAAGATGAGCTGGAAGACATGGAGCAGAACTTGTCCAAGATGG
TAGTGAAGTTGACAGATGCTAATTCTCAGTCCGAGGATGAGTCGGATTAG
AA sequence
>Lus10011023 pacid=23148682 polypeptide=Lus10011023 locus=Lus10011023.g ID=Lus10011023.BGIv1.0 annot-version=v1.0
MREIVTVQVGGYANFVGSHFWNFQDELLGLVDDPDSDPAFLNHQQYINMDVLFRTGETQKGVPTYTPRLVSIDLQGSLGSLSSRGSLSGSVVTSTSEVHQ
RNLFLQSLYQEPRRKSDNKQGEISDKDIVESLENSVQFWTDFLKVHYHPRSLYELSGLWVNSLEFDNYGIGKDVYSEGLRGEEISEKLRFFTEESDHIQG
FQFIADDSGGFSALSADLLEHIADDYPYIPILLYTVRAPSSPTNRKQTVSRNIHDAVSFSRLSSLSRLIVPLGLPSLSTSKACKSLHVKDEKAYHTSAVY
AAAIHSISLPLRMDTLGPTAGSSYASGAMDVNGVIQMLAGQARQNLVAILDTAMPAPALTGNVVQPSFLANLESLTSEISDDAEDLHAVESMVVHGALGS
GNHRASVTEVTDAIDAAYKMLSTRPMFSHLSTARCPLPIPLPFPSIFRPLIGTQGELLTNSTGPSCSSSLEVHSVPMAARLRSSTAILPYLENRLANLRK
LGITRGAPGGEIVRSWGFGKDELEDMEQNLSKMVVKLTDANSQSEDESD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37190 unknown protein Lus10011023
[exp]
0 1
AT5G52820 WD-40 repeat family protein / ... Lus10029493
[exp]
9.1 0.8062
AT4G11160 Translation initiation factor ... Lus10033933
[exp]
15.2 0.7727
AT5G52820 WD-40 repeat family protein / ... Lus10039597
[exp]
21.7 0.7845
AT2G27610 Tetratricopeptide repeat (TPR)... Lus10004892
[exp]
22.1 0.7401
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10005916
[exp]
23.8 0.7929
AT5G14520 pescadillo-related (.1) Lus10002201
[exp]
36.0 0.7516
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Lus10002287
[exp]
36.3 0.7391
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Lus10003953
[exp]
42.2 0.7458
AT3G02330 Pentatricopeptide repeat (PPR)... Lus10032091
[exp]
43.0 0.7039
AT1G51560 Pyridoxamine 5'-phosphate oxid... Lus10034828
[exp]
53.2 0.7376

Lus10011023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.