Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41150 1165 / 0 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) AT5G23570 335 / 3e-101 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT3G22430 64 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000998 [exp] 1283 / 0 AT5G41150 916 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Lus10004302 [exp] 487 / 1e-160 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10019214 [exp] 428 / 3e-138 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10041203 [exp] 68 / 7e-13 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 46 / 3e-05 AT3G22430 125 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150400 [exp] 1228 / 0 AT5G41150 1188 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Potri.018G137400 [exp] 365 / 4e-112 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 365 / 5e-112 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 291 / 2e-85 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 256 / 9e-73 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187900 [exp] 217 / 2e-59 AT5G23570 228 / 7e-66 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188100 [exp] 215 / 1e-58 AT5G23570 225 / 1e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 207 / 5e-57 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188200 [exp] 207 / 6e-57 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 215 / 9e-57 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10011024 pacid=23148637 polypeptide=Lus10011024 locus=Lus10011024.g ID=Lus10011024.BGIv1.0 annot-version=v1.0 ATGACAGTCAGAAGAGCCACGACACCCGTAAGAAGAACAGGTTGGTTTAAGAAGTTTTTTGATTTGCTGGACAGCCTTACTCTTGACCAAATCAATGAAC AGGATAGACAGTGGCACTGTGCCGCATGCCAAAATGGTCCGGGCGCTATTGACTGGTTCAAAGGGCTGCAGCCGTTGATCACACATGCCAGGACAAAAGG AGCGGAACGAGTAAAGCTACACAGGGAGCTCGCTGAACTTCTGGAGGAGGAAATGTCCAGGAGGGGAACTTCTGCTTTCCCGTCTGGGGAAGTTTATGCC CAATGGAGTGGGTTGACGGAGGAGGAGAATGATTACGATGTAGTTTGGCCTCCTATGGTCGTAGTGATGAATACACCGCTCGACAAGGATGACAACGATA AGTGGACTGGCATGGGCAACCAAGAGCTGCTTGAATATTTCCGAGCCTATGATGCTGTTAAGGCTAAACATTCGTATGGTCCACAAGGCCACCGTGGCAT GAGTCTTCTGATATTCGAGGCCTCGTCAAGGGGGTTTTTCGACGCCACGCGATTGAGTACTCACTTCACCAACCAGGGAACCGATAGGAATGCTTGGAAT CAGAAGCGGAACTGGTATTATCCTGGCGGGAAGAGGCAGCTCTATGGTTTCATAGCCACCAAAGAAGATGTCGATCTTTTGAATCAGCATTCTCACGGCA AGGCGAAGCTGAGATTCGAGATGCGATCATACAATGAGTTAGGGCGTCAAATAGTACTCGTCTTCAGTTTTAACATACCTGCCCACCACACTAGGCGCCG CTTTCCCCTTCCGTCTTCCCGCCACAATAACCCGCCAGAACTTATCCGCCGCCGATCAGCGGCCGCGATGGTACGATTCCACGAGCAGATAATCGCTGAT CTCCTCGATGAACCTTCCGGCGGAGTCGTAATCCTCTCCTCAGGCCTTTCCATCTCAAAGCTCGTCTCTTCACTTCTTCTCCTCCACGACTCTTCTCAAG GATCTCTCCTCATCCTCTCCCCTTCTTCCCAATCCGTCAAGTCCCAAATCACCTACCACCTCGAATCATTATCTTCCTCCTCCGCCGCCGACGAAGGAAA CCGCCTCAAAATCGCAGAAATCACTGCCGAACTCCCGACGAACAACCGCCTCGCGCTCTACACATCCGGCCGAATATGCTTCATCACAGCCAGAATACTC ATCGTCGACCTCCTAACCAACCGAATCCCGGTCAGCAGCCTCGCAGGATTGATCCTCCTCAACGCCCACTCCCTATCCGAGACCTCGACAGAGGCGTTCA TCGTCCGGATCGTCAAATCCCTAAGTCGCTCCGTCTACGTCCGCGCATTCAGCGACAAGCCACATTCGATGGTGGCAGGGTTCGCCAAGACAGAGAGGAT CATGAAGGCGCTCTACATTAGGAAGCTACATCTCTGGCCGAGGTTTCAAGTCTACGTCTCCGATGAGCTGGAGAAAAATCCACCGGAGGTGGTGGACGTT AGGGTTCCGATGAGCAAGTACATGGTCGTAATACAGAAGGCGATCATTGAAGTGTTGGACGCTTGCCTGAAGGAGATGAGGAAGACGAATAAGGTCGATG TTGAGGATTTGACAGTGGAGAATGGACTGTTCAAATCGTTTGATGAGATTGTGAAGAGGCAGTTGGATCCCATTTGGCATACATTGGGGAAGAAGACTAA ACAGCTCGTCTCGGATTTGAAGACCTTGAGGAAGTTGCTTGATTATCTCGTCAGGTATGATGCTGTGAGTTACTTGAAGTATTTGGATACACTGAGGGTG TCGGAGAGCTTTCGATCGGTCTGGATATTTGCAGAGTCGAGCTATAAGATATTCGATTACGCCAAGAGGCGAGTGTATAGGTTCACTAGGTTGAACGAGG TTAACTCGAAAGCCTTGCCTGCTAAACGGAGGAAATTGAGCAAGGATGGAACTGATAAAGAAGAAGTTGATGCTTCCTCGACAAGTATGGGCGATGGAGT TGCACTGGAGGAAGTTCTCGAGGAAGCTCCAAAGTGGAAGGTTTTACGTGAGATACTCGAAGAGATTGAGGACGAAAGGACAGCGAAGCAAGATGCAAAC TTTGCTGAGACCGACGAGTTGGATAGTGGAATCGTTCTAGTGGCTTGCAAAGACGAACGCTCTTGTATGCAGCTCGAAGATTGCATGACAAAGGGACCTC GAAAGGTAATGCAAGAAGAGTGGAAGAACTATCTGTTGAGCAAAGTAGACTTGCGAGGCTTACAAACGCCGCAAAAGAAGAAGCAGCCAAAGGAGCTTAA AGGAGTTGGAATTCTTGATGGAGTTGTTCCAGTAACGATTTCCCAGAAAACAGAACCTAGCAGCATTAACAAGCAGGAGCATGATGCCCTGATAGCAGCA GCTTTGCAGATACGAAAGGAGCAACAACGAAATGTTGTAGATGAGAAGCAGCAACCTCCGACCGAGAGTAGTAATAAAAAGAGGAAGGGAAAGCAGAAGA AGAAAACAGACCAACCTCAAATTTCAGAAGTCGATGAGAACAATTCAGTTCGAGGTGTTTCAATGCAAGGAGCAGCTCTTCGACGGCACCAAAGTGAGGA TCCTAACCCGGATAAATCAGAGACGAGTGCGAAGAGAATCCCACCTCTCTATTTCTACGCCATGGAAAGGGATGAGCCGATACTGGACATGCTGAAGCCG TCCGTGATCGTTGTTTACCATCCAGACACGACATTCGTTCGAGAGATTGAAGTCTACAAAGCTGAGAATCCATCAAAGGTAATGAAAGTGTATTTCCTAT TCTATGAAGCTTCGACCGAGGTCCAGAAGTTTGATGCCGGCATACGTAGGGAGAATGGAGCCTTTGAAACGCTGATCAGGCAGAAATCCATGATGATGAT TCCAGTTGATCAGTACGGGCACTGTGTGGGATTGAATTCGTACGCGGAACTCGAGGGTTCGAGTTCCCAGAACTCGGTAACTCGGAAGGCTGGTGGAAGG AAAGATCCTGAGAAAGAAATGCAGATCATAGTGGACATGAGGGAGTTCATGAGTAGCCTTCCCAATGTTCTTCACCAGAAAGGCATGCGCATTACGCCTG TTACGTTGGAAGTCGGAGACTACATCCTCTCTCCCTTGATCTGCATCGAGAGGAAGAGTATTCAAGACCTCTTCGGCAGCTTTGCCTCCGGCAGACTGTA CAACCAGGCCGAGATGATGGTACGGTACTACAGAATTCCCGTCCTCTTGATTGAGTTTTCGCAGGATAAGAGCTTCTCGTTCCAGTCAGCAGGTGACATT GGAGACGATGTCACACCCTATAGTGTTATATCAAAGCTATCATTGCTCGCCTTGCATTTCCCCCGGCTACGAATCATATGGTCTCGAAGCCTACACGCGA CCGCAGAGATATTCGCGTCTCTGAAGGCGAATCAGGACGAGCCTGAACTCGACAAGGCCGTGAGAGTCGGTGTCCCTTCGGAGGAAGGAATTGTCGAAAA CGATACGAGAGCTGAGAACTACAACACCTCAGCAGTCGAGTTCCTGAGGCGCCTTCCGGGGGTGACCGATTCGAACTACCGATCGATCATGGACGGGTGT AAGAGCTTGTCCGAACTAGCTCTAATGCCGGTCGAAAGGCTGGCTGAGCTAATGGGTGGGCAGAAAGCTGCTCGTACGCTCAGGGAATTCCTCGACGCCA AGTATCCTACTTTGTTATAG
AA sequence Show only first row Show all	>Lus10011024 pacid=23148637 polypeptide=Lus10011024 locus=Lus10011024.g ID=Lus10011024.BGIv1.0 annot-version=v1.0 MTVRRATTPVRRTGWFKKFFDLLDSLTLDQINEQDRQWHCAACQNGPGAIDWFKGLQPLITHARTKGAERVKLHRELAELLEEEMSRRGTSAFPSGEVYA QWSGLTEEENDYDVVWPPMVVVMNTPLDKDDNDKWTGMGNQELLEYFRAYDAVKAKHSYGPQGHRGMSLLIFEASSRGFFDATRLSTHFTNQGTDRNAWN QKRNWYYPGGKRQLYGFIATKEDVDLLNQHSHGKAKLRFEMRSYNELGRQIVLVFSFNIPAHHTRRRFPLPSSRHNNPPELIRRRSAAAMVRFHEQIIAD LLDEPSGGVVILSSGLSISKLVSSLLLLHDSSQGSLLILSPSSQSVKSQITYHLESLSSSSAADEGNRLKIAEITAELPTNNRLALYTSGRICFITARIL IVDLLTNRIPVSSLAGLILLNAHSLSETSTEAFIVRIVKSLSRSVYVRAFSDKPHSMVAGFAKTERIMKALYIRKLHLWPRFQVYVSDELEKNPPEVVDV RVPMSKYMVVIQKAIIEVLDACLKEMRKTNKVDVEDLTVENGLFKSFDEIVKRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVSYLKYLDTLRV SESFRSVWIFAESSYKIFDYAKRRVYRFTRLNEVNSKALPAKRRKLSKDGTDKEEVDASSTSMGDGVALEEVLEEAPKWKVLREILEEIEDERTAKQDAN FAETDELDSGIVLVACKDERSCMQLEDCMTKGPRKVMQEEWKNYLLSKVDLRGLQTPQKKKQPKELKGVGILDGVVPVTISQKTEPSSINKQEHDALIAA ALQIRKEQQRNVVDEKQQPPTESSNKKRKGKQKKKTDQPQISEVDENNSVRGVSMQGAALRRHQSEDPNPDKSETSAKRIPPLYFYAMERDEPILDMLKP SVIVVYHPDTTFVREIEVYKAENPSKVMKVYFLFYEASTEVQKFDAGIRRENGAFETLIRQKSMMMIPVDQYGHCVGLNSYAELEGSSSQNSVTRKAGGR KDPEKEMQIIVDMREFMSSLPNVLHQKGMRITPVTLEVGDYILSPLICIERKSIQDLFGSFASGRLYNQAEMMVRYYRIPVLLIEFSQDKSFSFQSAGDI GDDVTPYSVISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPELDKAVRVGVPSEEGIVENDTRAENYNTSAVEFLRRLPGVTDSNYRSIMDGC KSLSELALMPVERLAELMGGQKAARTLREFLDAKYPTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	0	1
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	3.0	0.7779
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10011025 [exp]	3.5	0.7505
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	8.7	0.7695
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	14.5	0.7710
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	18.5	0.7304
					Lus10000458 [exp]	25.8	0.7037
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	26.8	0.7566
					Lus10001494 [exp]	30.4	0.7162
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	31.0	0.7309
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	33.9	0.7499

Compare expression of checked genes

Lus10011024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.