Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15080 272 / 6e-92 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G27970 107 / 4e-27 Exonuclease family protein (.1) AT5G40310 104 / 3e-26 C2H2ZnF Exonuclease family protein (.1) AT2G48100 102 / 1e-25 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G50100 87 / 1e-19 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 85 / 1e-18 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 81 / 2e-17 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G25800 67 / 2e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50090 63 / 2e-11 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000997 [exp] 378 / 1e-133 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008787 [exp] 102 / 4e-25 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10022230 [exp] 99 / 4e-24 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10029642 [exp] 97 / 4e-23 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10042687 [exp] 88 / 7e-20 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10019321 [exp] 81 / 4e-17 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 76 / 1e-15 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 71 / 6e-14 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 71 / 1e-13 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373500 [exp] 291 / 2e-99 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 102 / 2e-25 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 97 / 2e-23 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.005G186600 [exp] 75 / 3e-15 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 71 / 7e-14 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10011026 pacid=23148647 polypeptide=Lus10011026 locus=Lus10011026.g ID=Lus10011026.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAGAATCAGCAGCTGGAGAAGATGAAGATGAAGGTAAAGAAGAACCCTAATAAGAAGCAACAGCTTCCCGCGGCGCCGCTCAATCCAAACT GGGCTCAACTCCAGCAGAAGCTGAACTCTCGACCTAGTTCTAAGCCTTCAACTCGGCCCTCAGAGCATCTCGTTTTAGATGCTCTCGCCATGGACTGTGA AATGGTTGGTGTTGGTCAAGCAAACCGAAGTGCTCTTGGACGCGTTACACTGGTAAATAAGTGGGGAAATGTTGTATATGACGAATTCGTTCGTCCCATG GAAGCTGTCATTGACTTCCGCACGCATATTAGTGGAATTCGACCCAGGGACTTAAAACAAGCGAAGAAATTCCCGGTTGTGCAGAAGAAAGTGGCCGAGT TGATAAAGGGAAGGATTCTTGTTGGTCATGCCCTGTCCAATGATTTTAAGGTATTGCTATTGAATCATCCAAAGAAGGACCTTCGTGATTCTTCCGAGTA CCCGCCTTTTCTCAAGGAACACCGCAGAAAATCGCTAAAGCATCTTGCGTCCGAGTTTCTCGGGATCGAAATACAAAATGGGGAACACTGCCCTGTTGAA GATGCTCGGGCTGCTATGGTACTCTACCAGAAGAACGTGAAAGAGTGGGAGAAGTATGCGAAATCTCAAGCTAGGTTGAATCGAAAGCAGCAGACGAATC GCAGGCCAAAAAAGAAACGAAAGGTCGACGATGATCATCCAACGGTATAG
AA sequence Show only first row Show all	>Lus10011026 pacid=23148647 polypeptide=Lus10011026 locus=Lus10011026.g ID=Lus10011026.BGIv1.0 annot-version=v1.0 MEEQNQQLEKMKMKVKKNPNKKQQLPAAPLNPNWAQLQQKLNSRPSSKPSTRPSEHLVLDALAMDCEMVGVGQANRSALGRVTLVNKWGNVVYDEFVRPM EAVIDFRTHISGIRPRDLKQAKKFPVVQKKVAELIKGRILVGHALSNDFKVLLLNHPKKDLRDSSEYPPFLKEHRRKSLKHLASEFLGIEIQNGEHCPVE DARAAMVLYQKNVKEWEKYAKSQARLNRKQQTNRRPKKKRKVDDDHPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	0	1
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	1.7	0.9238
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	5.5	0.8940
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	5.5	0.8907
AT2G40430			unknown protein		Lus10011462 [exp]	5.7	0.8952
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	7.7	0.9030
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	11.1	0.9016
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10014947 [exp]	11.6	0.8676
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	11.7	0.8443
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	12.1	0.8906
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	13.9	0.8768

Compare expression of checked genes

Lus10011026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.