Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01960 526 / 0 RING/U-box superfamily protein (.1) AT1G65040 60 / 2e-09 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 59 / 4e-09 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT1G18780 55 / 4e-08 RING/U-box superfamily protein (.1) AT2G42350 54 / 5e-08 RING/U-box superfamily protein (.1) AT1G18770 49 / 2e-07 RING/U-box superfamily protein (.1) AT2G20030 53 / 3e-07 RING/U-box superfamily protein (.1) AT2G28920 49 / 5e-07 RING/U-box superfamily protein (.1) AT3G13228 50 / 1e-06 RING/U-box superfamily protein (.1) AT4G12190 46 / 1e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000996 [exp] 713 / 0 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10040359 [exp] 59 / 6e-09 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 59 / 7e-09 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10034953 [exp] 55 / 8e-08 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 54 / 1e-07 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10023617 [exp] 53 / 2e-07 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10020007 [exp] 51 / 1e-06 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10031728 [exp] 51 / 2e-06 AT4G25230 843 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10031152 [exp] 51 / 2e-06 AT4G25230 821 / 0.0 RPM1 interacting protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111800 [exp] 548 / 0 AT5G01960 572 / 0.0 RING/U-box superfamily protein (.1) Potri.016G141200 [exp] 538 / 0 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.013G160000 [exp] 426 / 2e-146 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.019G132201 [exp] 335 / 1e-111 AT5G01960 377 / 2e-128 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 62 / 4e-10 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 61 / 1e-09 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 58 / 6e-09 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 56 / 4e-08 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 55 / 8e-08 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 53 / 2e-07 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011027 pacid=23148693 polypeptide=Lus10011027 locus=Lus10011027.g ID=Lus10011027.BGIv1.0 annot-version=v1.0 ATGGAAACCTCCGGCGCGGGCAATTCCGACCTCTTCAGACCGCCACCATCGTCTTCAGGCGGAGGATTAGCTACCAATTCCCGCAGCAGCAACAGCAGCG GAGGAGGAGGAGGACTCACGGCTGCTTCTATAATCCAGGCTCCTATCTCTGCTCTCCTCGAGTACTCCGGCTTCCTCCGACCTTCTAGGTCGTCATCCGA CTCCGATTCTTCTTCTTCTTCTTCGTCATCGGGTGATCATCTCATCTCTCACGATCCTCCTCCGGCCGCAAACAGCGGCAACGGAGAGGTTTCTATTCGG ATTATAGGCGCCGCCGACGATTCTGACCGGGGACAGCAGCTTAGGATCGCCTCCGACGGAGAGAGTCATGATTCTGGACCTGATCGCGAGGTTTCTAGTG CTTCTGCTGCTCAGTCTTCTTCTAACCCTAGCTTGGCCGCGGAAGACGGAGGAGAAGCGAACAGTGATGGTAATGGAAATGGTGGAGCTAACGGGGGAAG TAATGGAAGGGATTCTACTTACCAGAGATATGATATTCAGCAGGCTGCTAGGTGGATTGAGCAAGTTCTTCCGTTCTCTTTGCTTCTCTTGGTTGTCTTC ATCCGCCAGCACTTGCAAGGTTTCTTTGTCACCATTTGGATTGCTGTGGTGATGTTCAAATCGAATGATATTCTTCGCAAACAGACGGCTCTGAAGGGCG AGAGGAAAATGTCTGTTCTAGTTGGGATTTCAGTGGCATTCGCAGTTCATGTTGTTGGGGTTTATTGGTGGTATCAGAACGACGATCTCCTCTACCCTTT AGTTATGCTCCCACCAAAGGCTATACCACCTTTTTGGCATGCTGTTTTCATCATCATGGTCAACGATACTCTGGTGAGGCAGGCTGCAATGGTGATCAAA TGCATTCTTCTGATGTATTACCGGAATAGTAGAGGCAGAAATTATCGTCGGCAGGGCCAAATGCTAACTTTAATTGAATATTTGATGCTCCTGTATCGTG CACTGCTGCCTACTCCAGTGTGGTATCGCTTCTTTTTGAACAAGGAGTATGGTAGCCTCTTTTCCTCTTTGATGACAGGGCTTTACTTGTCTTTCAAGCT AACCTCTGTTGTCGAAAAGGTTCAATCATTCTTTGCTGCTCTGAAGGCATTGTCACGCAAAGAGGTGAATTACGGTGCTTATGCAACATCAGAGCAGGTG AACGCTGCCGGGGACTTGTGCGCCATATGCCAGGAGAAGATGCACGCCCCGATCCTACTCCGATGTAAACACATTTTTTGCGAGGATTGTGTTTCCGAAT GGTTCGAAAGGGAGAGGACATGCCCGTTGTGCAGGGCGCAGTTGAACCCTGCCGATCTCCGGTCTTTCGGAGACGGTTCGACCAGTTTGTTCTTTCAGGT ATTCTAA
AA sequence Show only first row Show all	>Lus10011027 pacid=23148693 polypeptide=Lus10011027 locus=Lus10011027.g ID=Lus10011027.BGIv1.0 annot-version=v1.0 METSGAGNSDLFRPPPSSSGGGLATNSRSSNSSGGGGGLTAASIIQAPISALLEYSGFLRPSRSSSDSDSSSSSSSSGDHLISHDPPPAANSGNGEVSIR IIGAADDSDRGQQLRIASDGESHDSGPDREVSSASAAQSSSNPSLAAEDGGEANSDGNGNGGANGGSNGRDSTYQRYDIQQAARWIEQVLPFSLLLLVVF IRQHLQGFFVTIWIAVVMFKSNDILRKQTALKGERKMSVLVGISVAFAVHVVGVYWWYQNDDLLYPLVMLPPKAIPPFWHAVFIIMVNDTLVRQAAMVIK CILLMYYRNSRGRNYRRQGQMLTLIEYLMLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLSFKLTSVVEKVQSFFAALKALSRKEVNYGAYATSEQV NAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRAQLNPADLRSFGDGSTSLFFQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	0	1
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	1.0	0.8889
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	5.1	0.8716
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	6.0	0.8692
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	12.0	0.8187
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	12.2	0.7926
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	14.1	0.8516
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	15.7	0.8354
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	15.7	0.8671
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	16.9	0.8314
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	21.0	0.8406

Compare expression of checked genes

Lus10011027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.