Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17615 359 / 5e-128 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 355 / 2e-126 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26570 281 / 6e-97 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 280 / 1e-96 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT5G24270 271 / 5e-93 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT1G64480 250 / 9e-85 CBL8 calcineurin B-like protein 8 (.1) AT4G33000 241 / 8e-81 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 230 / 1e-76 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G26560 194 / 1e-62 CBL7 calcineurin B-like protein 7 (.1) AT4G01420 191 / 6e-62 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022407 [exp] 296 / 9e-103 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 290 / 1e-100 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10038764 [exp] 255 / 7e-87 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10003191 [exp] 248 / 5e-84 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 248 / 7e-84 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 248 / 2e-83 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 247 / 4e-83 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10023069 [exp] 245 / 9e-83 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10039098 [exp] 254 / 3e-82 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084200 [exp] 387 / 4e-139 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 378 / 2e-135 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.012G015100 [exp] 290 / 1e-100 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.006G002900 [exp] 289 / 5e-100 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.015G013100 [exp] 288 / 9e-100 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.016G003500 [exp] 288 / 1e-99 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 285 / 2e-98 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 282 / 2e-97 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.001G090200 [exp] 275 / 2e-94 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.015G013200 [exp] 258 / 8e-88 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011028 pacid=23148660 polypeptide=Lus10011028 locus=Lus10011028.g ID=Lus10011028.BGIv1.0 annot-version=v1.0 ATGGGCTGTTTTAGTTCCAAGGTAATTAGGAAGTTCCCAGGACACGAGGATCCGATTTCCCTTGCTTCTCAAACAGCCTTCAGTGTGAGTGAAGTTGAAG CTTTATTTGAATTGTTCAAGAGCATTAGCAGTTCCGTTATTGACGATGGGCTGATCAGCAAGGAAGAGTTTCAGCTGGCCCTCTTCAAGAACAAAAAGAA AGAGAACCTCTTTGCTAACAGGATTTTTGATCTATTTGATACGAAGCACAAGGGAGTCATCGATTTCGGCGACTTTGTTAGGTCACTCAATGTGTTTCAT CCTAATGCCCCTCAAGAAGACAAGATTGAGTTTTCTTTTAAACTGTATGATCTGGAGAACACTGGATATATCGAGCGACACGAGGTTAAGCAGATGCTGA TTGCACTTCTCGGTGAATCCGAAATGAAGTTGACAGACGAAACCATTGAAATCATTCTTGACAAGACGTTCATGGAAGCTGATATCAACAACGATGGCAA GATCGACAAGGGCGAATGGCATAGCTTCGTCTTCAAGAATCCGTCTCTGCTAAAGATCATGACACTTCCCTATTTGAGGGACATCACTACTACATTTCCA AGTTTTGTTTTCAACTCAGAGGTGGATGAGATTGCTACCTAA
AA sequence Show only first row Show all	>Lus10011028 pacid=23148660 polypeptide=Lus10011028 locus=Lus10011028.g ID=Lus10011028.BGIv1.0 annot-version=v1.0 MGCFSSKVIRKFPGHEDPISLASQTAFSVSEVEALFELFKSISSSVIDDGLISKEEFQLALFKNKKKENLFANRIFDLFDTKHKGVIDFGDFVRSLNVFH PNAPQEDKIEFSFKLYDLENTGYIERHEVKQMLIALLGESEMKLTDETIEIILDKTFMEADINNDGKIDKGEWHSFVFKNPSLLKIMTLPYLRDITTTFP SFVFNSEVDEIAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	0	1
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	3.2	0.8424
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	5.5	0.8233
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	8.7	0.7677
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	8.8	0.8086
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	9.6	0.7698
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	10.7	0.8334
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	15.1	0.8100
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	17.1	0.7817
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	17.3	0.8123
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	17.5	0.8129

Compare expression of checked genes

Lus10011028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.