Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27800 416 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27300 261 / 5e-82 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT3G25210 196 / 5e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01400 114 / 1e-27 unknown protein AT1G05670 107 / 5e-25 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09900 104 / 3e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 103 / 1e-23 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36240 102 / 2e-23 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G71060 101 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 100 / 6e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038215 [exp] 148 / 3e-40 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025890 [exp] 133 / 2e-35 AT3G25210 430 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042452 [exp] 111 / 1e-26 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026218 [exp] 108 / 9e-26 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 109 / 1e-25 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 106 / 5e-25 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 105 / 3e-24 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 103 / 7e-24 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002675 [exp] 102 / 2e-23 AT4G01400 570 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093700 [exp] 476 / 7e-168 AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G248100 [exp] 216 / 1e-66 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 124 / 4e-31 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G032100 [exp] 122 / 3e-30 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G105900 [exp] 114 / 6e-28 AT4G01400 576 / 0.0 unknown protein Potri.016G025600 [exp] 114 / 2e-27 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G150100 [exp] 113 / 3e-27 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 112 / 5e-27 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G108500 [exp] 110 / 1e-26 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 111 / 2e-26 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011029 pacid=23148622 polypeptide=Lus10011029 locus=Lus10011029.g ID=Lus10011029.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTCGTGTACTAAAATGGCGGAGTCTCATTTCCTCCACCCTCCAAACCTCTACAGTCCTTCGATTCTACTCGAACAGACCGCCGTCAAGGT CGCCGGCTAGGCGAGCAAGCCGGAGATTAAGAGACAGCCAAAAACCCATCCTAGACGAATCCAAGTTCCAAACAATCCTCGAAAAGCTCCCGCCACGATT CACCAACGAAGACCTCTTCATCGCGTTGACCATGCAGGAAGATCCATTAGTTTGCTTGGAGCTTTTCAATTGGTCTGCTCATCAGCCTAGATTCAAGCAC GATTCTTCAACTTATCATGCCGTGATCAAGAAGCTCGGCGTCGCCAAAATGTACCAGGAAATGGACGAAATCGTCAGTCAGGTACTGGCAATTCCTTCCA TTGGTAGTAGTAACGAAGAAGCTCTGTTCAATACGATAGTTTACTTCCTATGCGAATCCAGGAAGCTAACCAGAGCAGTGAAAGTGTTTCAGCACATGAG AAAGTCTCGGAATTCGAAATCCAGGCCGTCGATTCGAACCTACAACATCCTATTCACAGCAATGCTGAGTAACAAGGGAGGCAATTCCTACGTGAATCAC ATGTACATGGACACGATCAGCAGCCTGTTCAAGCTGATGGTCAACGACGGTATCGAACCGGACATATACTCGCTGAATTCGATGATCAAAGGCTATGTTT TGTCCCTCCATGTGAACGAAGCTCTTCGAGTGTTTCACCAGATGGGAGTGGTGTATAGTTGCTTGCCGAATTCGTTCTCGTACGATTATCTGATTCATGG TTTGTGTTCGCAAGGCAGGACGATTAATGCGAGGGAGTTGTTTGATGAGATGAAGGGGAAAGGGTTTGTGCCGAGTGAGAAGTCGTATAATTCGCTTGTA AGTGCTTTGGCTATGAATGGGGAGGTTGATGAAGCTGTTGATTGTTTGAGGGATATGAGGAAGGAGGATCGTCGGAGGTTTGCGGATTTGATTACGTATA GGACTGTGTTGGATGAGATTTGCAGGAGAAGGAGTGTTGATGAAGCTATGGAGGTCTTGAAGGAATGGAGGAATGGAGAGTTTGTTGATGGTGTTACTTA CAGGAAGCTTCTTTCTGTTCTTGGTGATGGGTTTGAAAACTCTCAGGCATTTTTCTGA
AA sequence Show only first row Show all	>Lus10011029 pacid=23148622 polypeptide=Lus10011029 locus=Lus10011029.g ID=Lus10011029.BGIv1.0 annot-version=v1.0 MASIRVLKWRSLISSTLQTSTVLRFYSNRPPSRSPARRASRRLRDSQKPILDESKFQTILEKLPPRFTNEDLFIALTMQEDPLVCLELFNWSAHQPRFKH DSSTYHAVIKKLGVAKMYQEMDEIVSQVLAIPSIGSSNEEALFNTIVYFLCESRKLTRAVKVFQHMRKSRNSKSRPSIRTYNILFTAMLSNKGGNSYVNH MYMDTISSLFKLMVNDGIEPDIYSLNSMIKGYVLSLHVNEALRVFHQMGVVYSCLPNSFSYDYLIHGLCSQGRTINARELFDEMKGKGFVPSEKSYNSLV SALAMNGEVDEAVDCLRDMRKEDRRRFADLITYRTVLDEICRRRSVDEAMEVLKEWRNGEFVDGVTYRKLLSVLGDGFENSQAFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	0	1
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	1.4	0.8286
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	7.5	0.8072
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	8.5	0.7885
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	8.8	0.8244
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	10.2	0.7966
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	10.6	0.7970
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	15.0	0.7879
AT1G02290			unknown protein		Lus10028606 [exp]	19.3	0.7625
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	27.3	0.6886
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	29.0	0.7342

Compare expression of checked genes

Lus10011029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.