Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 554 / 2e-173 CHR31 chromatin remodeling 31 (.1) AT3G24340 493 / 2e-153 CHR40 chromatin remodeling 40 (.1) AT5G20420 330 / 1e-93 CHR42 chromatin remodeling 42 (.1) AT3G42670 328 / 4e-93 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT2G16390 281 / 3e-79 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 270 / 5e-76 CHR34 chromatin remodeling 34 (.1) AT3G19210 152 / 2e-37 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G25170 127 / 3e-29 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 126 / 7e-29 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G63950 122 / 9e-28 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003003 [exp] 1717 / 0 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10040136 [exp] 670 / 0 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10001090 [exp] 348 / 2e-110 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10040956 [exp] 320 / 4e-90 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 305 / 2e-85 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10041963 [exp] 286 / 2e-80 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 270 / 6e-75 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 271 / 2e-74 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040137 [exp] 131 / 2e-35 AT1G05490 91 / 2e-22 chromatin remodeling 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 654 / 0 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 335 / 2e-95 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.009G120700 [exp] 285 / 1e-80 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 220 / 8e-59 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 177 / 1e-47 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.013G048500 [exp] 166 / 4e-41 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.018G021100 [exp] 125 / 1e-28 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.006G262200 [exp] 125 / 1e-28 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.008G149900 [exp] 114 / 3e-25 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.001G123400 [exp] 114 / 5e-25 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011033 pacid=23148616 polypeptide=Lus10011033 locus=Lus10011033.g ID=Lus10011033.BGIv1.0 annot-version=v1.0 ATGGCGGATAGGAGGTGGACAAGGTTAATGGAAGATAAGCTTCTGCTGGAGAAGTACCAGGAAATGAAACGGAGGAGAGGAGAACAGAGCTCTTCGTCCG CGCAGGACAGCTACAATGTCCGTTTCGGTAGAAATGGCGGTGGCGGGGGTTCGTCGTTTTCTTCTTCGTCGTCGTCGTCGTCTTCCGAGGAGGAGGAGGA GCCGTCTCTATCCTCGTCTTCGCCGTCGGAGGAGGACGAGGAGGAGGTGGAGTCCGACTATGGCGTTGAGTTTATCAGCGTTGTTCGAGAAGGTAATGTA GTCGCCGATGGAGTGGAGTATGTAGGCAGTACATGGGAGTCTGCGGAGGAAGCTGGAACGGGGGAGAGCAAGGTCGGAGGTGCACCGGAGAAGAACGGAG ATTCCGATACTGTGCAGGACGTTGAAGCTAGGAGTCCTCCATTGGAGGAGGAGGATGAAGATTCCGATTCTGATTCTGATTCTGATTACCTAGGTTCAAA AGAGGGGAAATCAAAACCGGAAGATCCTCCGATTGAAGAAATGGAGAGAGAAGAGCGGAATGAAGTGATTCAGATTGATGATTCCGAGTCCGAATCCGAA CTAGAAGAGGTGCAGGATGTGGATAGAGTAGAAGAAACGGAAGAAGAAGAAGAAGATGAGATCCCGACTACGGATGTGGAAACAGCAGTAGGAGAAGAAA AAGAAGAAGAGATTCCGATTATAGATTTGGAAATGGATATGGAAACAGCGGCTGAAGAACTGGAAGAACAAAAGGAAGAAGAAGAGATTCATATGATGGA TGTGGATGAAGGAAGAATGCCAGAAAGAAGATCAGTACCAGAAGAAGTAAGAGTAGTAATCGAAGAAGAAGAAGTTGAAGAGATTCAGACGAAGGATGTG GATGAAGGAAGAATGCCAGAAAGAAGATCAGTACCAGAAGAAGTAAGAGTAGTAATCGAAGAAGAAGTTGAAGAGATTCAGACGATGGATGTGGATGAAG GAAGAATGCCAGAAAGATCAGTACCAGCAGGAGAAGAAATGGAAAAGGAAGAAGAAAGAGTAGTGATAGAAGAAGAAGAAGACGATGAAGAAAATGTTCA GATTGCAGCAGATAAGCCTGAGGTGAGTCCTGAGGAGTTGAGTAGTAGTTCAAGAGTTGCTGGAAGAACGGCCTGGGCTTGGGAAGAAGTTCGAGTCGTT TCGGAACAGAAGGAGGAGGAAGATCAGGAGGACAACAATGATGATGAAATTAGCAGTGCTGAGGCTCAAGAGGAGGATCAACAGACCGAGCAGGAGGAGA TCAAACGCCTTTGGGACGAGTTCGAGTTAGCTCGAAAAGAGGAGGAAAAAGCAAAACCAGTCCCTACTAAGAAGGTGGTGGTGAGTAATGGCTTCAATGG ACGAGGAGCAAAAAAGCCAAAGGTTGAAATTGGTGGCTTGAGTTCCAAACCAGACATTGGAAGGAAATTTGAAATCAACAGTTGTGATGATCCGTTAGTT GCAGAAGTTGCAAGAGATGAAGGGAAGGTAGAAGAAGATGTTATTACTGTTGAGGCTGCTAAAGAGAAGGAGCAGGAACAATGCATGTCGAAACCGAGTT GGAAACCGTGTAGGAAAACGAGGAAGGTGTTTGAAGAGAGTGAAGTGGTAAACATACTTGCAGAGTCTGTATTAGGAGATGCAAAGTTGCCAGTGGACGA TGAGGAGGACGAGGAAGATAATGAGCCTCCAGCAGAGGTAAACGAGAATCAGCGACAGGTTGTAACGAGACGGATATGGGGTTGCGACGAGGAGGCTAGT CCACCAGAGAAATCCGAGCATGAGAAGGAGATAGAGGGTCTGTGGGAGGAATTCGCATTAGCTAAATATGGAGATGAGGAGAGCTCTAGTGTGATACAGG AAGATACGACGCAATCTGAGACCGAAATCGACCCTAGTCGCTGTCATCCGGGACATCATCAACTGAGACTAGACGAAGAAATCGGTCTCATCTGCAGAAT CTGTCACCATGTAGAATTGGAGATCAAATATCACGTAGCACCCTTTGCTGAGGAAAAGTACCGATATTCGAAGAAGGAAAACTCAGAAAATTGGGATAAA AAACTGCTCAACGAATTCTATGCTCAGGAGGATTCCGATAACTTCCACCGCAAGCTTCATCAGCAAGAAAAAGACGGTACAGTCTGGGATATAATGCCCG GGATTCGAGAAGGCCTGCACGAGCATCAACAAGAAGGTTTCGAGTTCCTGTGGAGGAACATCGGGGGAGACATTCGTCTCGCGAACTTGAAATCTCCAGC CGGAGAAGAAGCAAGCGGATGCATCATTTCCCACGCACCGGGTACGGGGAAAACTAGGTTAGCCATTCGGTTCCTCCAGACTTACATGAAGCAGTTTCCC GAATGCAAGCCGATGATCATCGTCCCTTGCAGCATGCTAATCACTTGGGAAGCCGAATTCAAGACCCTGGGAGTCGAAACGCCTCGTTTCGACCTCAACG ACGCGAAGCTAACAGGTAAAGAAAGCTCCGCGGCCATGGGGTTACTCCGGGAGTATAGAGGGACTCAGACTGTGCGTTGGGTGAAGCTTTATTCATGGCA GAAGGAGAGTGGGATTCTTTTGATGAGTTACAAGCTTTACGAGGAGCTCGTTGGTCGAGGCATGAAGAAGAAGAGGAACAAAACCGAATCGAGTAAGAGC AGCCGCCCGATCGATGAAAGAACGAAGCAAGTGCTCCTCGAGGTCCCGGGATTGGTGATTCTCGACGAGGGACACAATGCGAGGAATCAAGATAGTCTTA TATGGAGGGCGTTGTCAAATCTCACGACGAAGAAGCGTATCGTGCTGTCGGGAACTCCGTTCCAGAACAATTTCGACGAGTTCTTCAACATATTGTGGGT TGCTAGGCCGAATTTCGCCAATAGCATCCCATGCGGTGCGAATTGGGTTTCGAGCAAGAAGAAGCGTGGGACGGAAGTTAACGAAATGAGGGAGAAATGG CAGTCTTTTACGTGTCATTTGGGGAAAAAGACAAACGACGGGCGTGAAGTTAAGCAGCTACAGGAGTTGAGAGCTTTCATCAACCCCTTTGTTCATACCT ACAAAGGGGATATCTTGGACAAGAAGCTACCTGGATTACGTGACTCGGTTCTGATACTGAAGCCGGCCAAGTTCCAGCAAGGGCAGATCGCTCGGATTCA AGCGATGAGCCACACACTTGGATTGATGGAGAAGACTATACAGTACTTCCATTGGGAGCATGTTCTTTCGCTCGCCTCGGTTCATCCGTACCTGCTCTCA AACTGCACGGGTCCATATCAAACCGAATCGGTCAGCAAATCGATGCTGGACCAGCTCAAGCTAACTCCTGAGGCCGGAGTGAAGACTAAGTTTCTGATGG AGCTGATCAAAATCTGCGAGATTATCGAGGAGAAGGTGCTAGTGTTCAGCCAGTTCCTCGATCCTTTGAAAATGATCTCGGACCAGCTCGAGAAGCACCG GAACTGGATCGCCAACACCGACTTCCTCTACATGCGCGGTGAGCTAACCAGAACCGAGCGCCAGAAGATGATGAAGAGCTTCAACGACCCGGGAAGCAAA GCGAAGGTGCTCCTCGCGTCGACCAAGGCCTGCTCCGAAGGGATCAGCTTGATCGGCGCTTCGAGGGTGGTCCTGCTCGACGTGGTTTGGAATCCTTCTG TGGCTCGACAGGCTGTCAGCCGGGCTTACAGGCTGGGGCAGACCCGAGTTGTGCATGTGTACAACTTGATCACCTCCGGTACGATCGAGGAGCAGAAGTT TAAGAGGCAGGTGAAGAAGGATAAGCTTTCGGACATGGTTCTCTTCTCGGCTGAGAAATCGGCGGATTGTGATGGTGGGAGTAGGGAGCTGGGGGATTTG GCTGAGGAGGAGAAGGATAAGGTTCTGGAGATGCTGCTGGAGCGTGAGAATCTGAAAGGAATCTTCAAGGAGATCATTTACCAACCGAAAGATTCAAAAG TCGAGGATGGATCGGTTCCTCCCGGGTTGATTGATCTCGGAGAAACTTAA
AA sequence Show only first row Show all	>Lus10011033 pacid=23148616 polypeptide=Lus10011033 locus=Lus10011033.g ID=Lus10011033.BGIv1.0 annot-version=v1.0 MADRRWTRLMEDKLLLEKYQEMKRRRGEQSSSSAQDSYNVRFGRNGGGGGSSFSSSSSSSSSEEEEEPSLSSSSPSEEDEEEVESDYGVEFISVVREGNV VADGVEYVGSTWESAEEAGTGESKVGGAPEKNGDSDTVQDVEARSPPLEEEDEDSDSDSDSDYLGSKEGKSKPEDPPIEEMEREERNEVIQIDDSESESE LEEVQDVDRVEETEEEEEDEIPTTDVETAVGEEKEEEIPIIDLEMDMETAAEELEEQKEEEEIHMMDVDEGRMPERRSVPEEVRVVIEEEEVEEIQTKDV DEGRMPERRSVPEEVRVVIEEEVEEIQTMDVDEGRMPERSVPAGEEMEKEEERVVIEEEEDDEENVQIAADKPEVSPEELSSSSRVAGRTAWAWEEVRVV SEQKEEEDQEDNNDDEISSAEAQEEDQQTEQEEIKRLWDEFELARKEEEKAKPVPTKKVVVSNGFNGRGAKKPKVEIGGLSSKPDIGRKFEINSCDDPLV AEVARDEGKVEEDVITVEAAKEKEQEQCMSKPSWKPCRKTRKVFEESEVVNILAESVLGDAKLPVDDEEDEEDNEPPAEVNENQRQVVTRRIWGCDEEAS PPEKSEHEKEIEGLWEEFALAKYGDEESSSVIQEDTTQSETEIDPSRCHPGHHQLRLDEEIGLICRICHHVELEIKYHVAPFAEEKYRYSKKENSENWDK KLLNEFYAQEDSDNFHRKLHQQEKDGTVWDIMPGIREGLHEHQQEGFEFLWRNIGGDIRLANLKSPAGEEASGCIISHAPGTGKTRLAIRFLQTYMKQFP ECKPMIIVPCSMLITWEAEFKTLGVETPRFDLNDAKLTGKESSAAMGLLREYRGTQTVRWVKLYSWQKESGILLMSYKLYEELVGRGMKKKRNKTESSKS SRPIDERTKQVLLEVPGLVILDEGHNARNQDSLIWRALSNLTTKKRIVLSGTPFQNNFDEFFNILWVARPNFANSIPCGANWVSSKKKRGTEVNEMREKW QSFTCHLGKKTNDGREVKQLQELRAFINPFVHTYKGDILDKKLPGLRDSVLILKPAKFQQGQIARIQAMSHTLGLMEKTIQYFHWEHVLSLASVHPYLLS NCTGPYQTESVSKSMLDQLKLTPEAGVKTKFLMELIKICEIIEEKVLVFSQFLDPLKMISDQLEKHRNWIANTDFLYMRGELTRTERQKMMKSFNDPGSK AKVLLASTKACSEGISLIGASRVVLLDVVWNPSVARQAVSRAYRLGQTRVVHVYNLITSGTIEEQKFKRQVKKDKLSDMVLFSAEKSADCDGGSRELGDL AEEEKDKVLEMLLERENLKGIFKEIIYQPKDSKVEDGSVPPGLIDLGET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	0	1
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	2.0	0.9310
AT1G75580			SAUR-like auxin-responsive pro...		Lus10012432 [exp]	3.2	0.9138
AT2G39870			unknown protein		Lus10004675 [exp]	5.7	0.9156
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	8.1	0.9205
AT3G53540			unknown protein		Lus10025296 [exp]	10.8	0.8842
AT5G60370			unknown protein		Lus10023342 [exp]	11.2	0.9161
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	11.7	0.9233
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	12.2	0.9252
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	13.7	0.9212
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	17.4	0.8764

Compare expression of checked genes

Lus10011033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.