Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17090 778 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 581 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 441 / 1e-150 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 428 / 4e-145 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 422 / 2e-142 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 399 / 1e-133 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 363 / 5e-118 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 329 / 1e-104 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 292 / 2e-92 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003005 [exp] 1015 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 803 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 753 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 573 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 551 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 447 / 5e-151 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10004398 [exp] 438 / 3e-149 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10018491 [exp] 437 / 4e-148 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 422 / 5e-143 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148900 [exp] 829 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 815 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 602 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 590 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 439 / 9e-149 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 437 / 9e-148 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 432 / 8e-147 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.001G087600 [exp] 426 / 5e-144 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.002G159300 [exp] 402 / 1e-132 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 400 / 4e-132 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10011035 pacid=23148659 polypeptide=Lus10011035 locus=Lus10011035.g ID=Lus10011035.BGIv1.0 annot-version=v1.0 ATGGCACTAACTCTACGTTCGCCAACATCCTTCACCAATCTAAAGGACACCACTAGATCCCTACTAAGAACAGACAATGTCAGCTCGAACGGCTCGATCT GCTTCCCGCAAATCAAGCCGGGACGCGGCCAAGTACTTGGCCGCCGCGTCCAAGCTCACAATGGCCTAATCCTACCAAGTGAAGAGAAGCTTCACTTGCT GTCGATCCCGCACGACAACAACAGCGCGAAGGTGCCAGTGTTCGTGATGCTACCACTCGACACGGTGACACACGGCGGGCACTTGAACAAGCCGAAGCTG ATGAACGCTAGCTTGATGGCTTTGAAGAGGGCCGGGGTCGAAGGTGTTATGGTTGATGCTTGGTGGGGGTTGGTTGAGAAAGAAGGGCCGTTGAAGTATA ACTGGGAAGGGTATGCTGAGCTTGTGCAGATGGTCAAGCGCCATGGGTTGAAGATTCAGGTGGTCATGTCGTTTCATCAGTGTGGTGGGAATGTTGGTGA TTCTTGCAGCATTCCTTTGCCTCCATGGGTTCTTGAAGAGATCAGCAGGAACCCGGACCTTGTGTACACGGACAGATCGGGGCGTAGGAACCCTGAGTAC ATCTCGTTGGGATGCGACGCGTTGGCTGTGCTGAGAGGAAGAACACCGATTCAAGTTTACACGGATTACATGAGAAGTTTCCGCAACAGGTTCAGAGATT ACCTTGGGAATGTCATTGTGGAAGTACAAGTAGGCATGGGACCTTGTGGAGAACTGAGGTATCCAGCATATCCAGAGAGCAATGGCACATGGAAATTTCC AGGAATCGGGGAATTCCAATGCTATGACAAGTATATGATAGCTTCACTCAAAGCTTCAGCAAACGAACTAGGAAGGCCAGACTGGGGGATAGGAGGGCCG CATGATTCCGGACAGTACAATCAGTTCCCCGAAGACACCGGGTTTTTCAAGTGGGATGGTACATGGAATACGGATTACGGCCAGTTCTTTCTAGAGTGGC ATTCAGAGAAGCTGATACGTCATGGAAACGACATCTTAGCAGCTGGGAAGGGGATATTCAAGGGCACTGGAGCAAAGCTATCAGGGAAAGTAGCTGGAAT CCACTGGCATTACAAGACTAGGTCTCATGCAGCAGAGCTCACAGCAGGGTACTACAACACTAGGTACCGCGACGGGTACCTACCCATATCGCGGATGTTC GGCAGGCACGGAGTCGTGCTGAACTTCACGTGCATGGAGATGAGGGACGGGGAGCAGCCCGAGTACGCGAGCTGCTCGCCTCAGGGGTTGGTGTGGCAAG TTCAGATGGCAACGAAAGCTGCCGGGATTGAACTTGCCGGTGAGAATGCATTGGAGAGGTATGATGCAGATGCTTACAGACAGGTTATGGCGACTAGTGG AGCTGAGCTAGGGAATGGATTGACTGCTTTCACTTACTTGAGGATGAATAAAAGGCTGTTTGAAGAAGGGAACTGGAGACACTTGGCTGAGTTTGTGAAG AGCATGTCCGAAGGTGGGGAGAATGGGCTGGAAGCTGCAACACAGAGAAGTGATCTGTTCATTGGGTTTGTTACTGATAAGGATTTCAAGGAGATGGGTG ATATTCTGCTTGTGTAA
AA sequence Show only first row Show all	>Lus10011035 pacid=23148659 polypeptide=Lus10011035 locus=Lus10011035.g ID=Lus10011035.BGIv1.0 annot-version=v1.0 MALTLRSPTSFTNLKDTTRSLLRTDNVSSNGSICFPQIKPGRGQVLGRRVQAHNGLILPSEEKLHLLSIPHDNNSAKVPVFVMLPLDTVTHGGHLNKPKL MNASLMALKRAGVEGVMVDAWWGLVEKEGPLKYNWEGYAELVQMVKRHGLKIQVVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSGRRNPEY ISLGCDALAVLRGRTPIQVYTDYMRSFRNRFRDYLGNVIVEVQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMIASLKASANELGRPDWGIGGP HDSGQYNQFPEDTGFFKWDGTWNTDYGQFFLEWHSEKLIRHGNDILAAGKGIFKGTGAKLSGKVAGIHWHYKTRSHAAELTAGYYNTRYRDGYLPISRMF GRHGVVLNFTCMEMRDGEQPEYASCSPQGLVWQVQMATKAAGIELAGENALERYDADAYRQVMATSGAELGNGLTAFTYLRMNKRLFEEGNWRHLAEFVK SMSEGGENGLEAATQRSDLFIGFVTDKDFKEMGDILLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	0	1
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	2.4	0.8802
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	4.9	0.9224
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	4.9	0.8904
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	6.0	0.8931
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	6.3	0.8888
AT3G50685			unknown protein		Lus10014321 [exp]	7.1	0.8641
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	10.7	0.8523
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	11.0	0.8514
AT1G30260		AGL79	unknown protein		Lus10038517 [exp]	14.1	0.8449
AT2G21960			unknown protein		Lus10006822 [exp]	18.2	0.8359

Compare expression of checked genes

Lus10011035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.