Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 130 / 5e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000258 [exp] 411 / 1e-146 AT1G32730 140 / 6e-40 unknown protein Lus10001085 [exp] 210 / 1e-66 AT1G32730 253 / 1e-82 unknown protein Lus10040132 [exp] 199 / 3e-62 AT1G32730 243 / 2e-78 unknown protein Lus10003008 [exp] 139 / 6e-42 AT1G32730 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085901 [exp] 191 / 1e-58 AT1G32730 325 / 3e-110 unknown protein Potri.001G148500 [exp] 176 / 8e-53 AT1G32730 315 / 5e-106 unknown protein Potri.005G234200 [exp] 41 / 0.0005 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10011037 pacid=23148615 polypeptide=Lus10011037 locus=Lus10011037.g ID=Lus10011037.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCGTCTCCGGCGCCGATGATCAACACCTCCGACTCCAGCCTCACCCCCGCCGCCGTATCATCAGGATCCCAACCTAAGACCGTCCGTCACG TCAATAGACCCAAGTGCACGCAGTGCGGAAATCTCGCTCGCTCCAGGTGTCCGTATCAGTCCTGCAAGAGCTGCTGCTCAAAAGCCAAAAATCCATGCCA CATTCATGTTCTGAAAGCAAATGCAACCCCTCCATACAAAGCGCCATCGGCAACTATGATTTCTTTCGATCAACCGTCAGCCGAATCATCTCCTGCTATG AGCTCGCTTCGTGCTGCATCATTCGTGCAAAAACTCTCGAACAGCTTCACCCTACTCAACAATGCACAAACTCCGCATTTAAGGAAGACTCCGATGACAA AGGAATCTGTAGCCATTAAGATAACCCTCGAGAAACAGAACGAAGCTTACAATCGGTACGTGCAGAACATACGCTTACTAGAGGAAGCATTGTCCATGAG ACTCATGCAGGGGAGCTCGTCGCAAGATGTAACGATTACTGATAGCGACAATGCTGCTGCAAAGAAGAGGAAGCAACTGATCGTCGACGAATGGCTGAAG AAGCTGGAGGAATGGGAGCTCACAAGAAGACCGGAAAAGACGAAAACTTGGTCTAATCGGAGGGCTTCAACGAGCAAGAATGAGGCGGATTCGAGAAAAG GTATGGATGATTACTCTTCTAAGCTAGTTAGAACAGTAGAGGTAAGTGATCAGGGAATTTTTAGTAGGGTTGATGCACATTTTGCTTCCCTGGCAAAGAT AGCTAGAAAATGA
AA sequence Show only first row Show all	>Lus10011037 pacid=23148615 polypeptide=Lus10011037 locus=Lus10011037.g ID=Lus10011037.BGIv1.0 annot-version=v1.0 MAASSPAPMINTSDSSLTPAAVSSGSQPKTVRHVNRPKCTQCGNLARSRCPYQSCKSCCSKAKNPCHIHVLKANATPPYKAPSATMISFDQPSAESSPAM SSLRAASFVQKLSNSFTLLNNAQTPHLRKTPMTKESVAIKITLEKQNEAYNRYVQNIRLLEEALSMRLMQGSSSQDVTITDSDNAAAKKRKQLIVDEWLK KLEEWELTRRPEKTKTWSNRRASTSKNEADSRKGMDDYSSKLVRTVEVSDQGIFSRVDAHFASLAKIARK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32730			unknown protein		Lus10011037 [exp]	0	1
					Lus10018446 [exp]	2.6	0.7945
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	4.0	0.7311
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	4.9	0.7333
					Lus10001825 [exp]	10.2	0.7697
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	14.0	0.7174
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	20.2	0.6866
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	21.0	0.7025
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	23.7	0.6352
					Lus10001078 [exp]	24.5	0.7011
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	27.8	0.6963

Compare expression of checked genes

Lus10011037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.