Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11010 331 / 1e-95 AtRLP34 receptor like protein 34 (.1) AT3G05370 328 / 5e-95 AtRLP31 receptor like protein 31 (.1) AT5G25910 320 / 1e-92 AtRLP52 receptor like protein 52 (.1) AT1G71400 318 / 2e-91 AtRLP12 receptor like protein 12 (.1) AT3G05360 316 / 2e-91 AtRLP30 receptor like protein 30 (.1) AT3G05660 318 / 3e-91 AtRLP33 receptor like protein 33 (.1) AT3G28890 310 / 4e-90 AtRLP43 receptor like protein 43 (.1.2) AT5G27060 315 / 8e-90 AtRLP53 receptor like protein 53 (.1) AT1G47890 312 / 3e-88 AtRLP7 receptor like protein 7 (.1) AT3G23110 306 / 1e-87 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011064 [exp] 1053 / 0 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10032335 [exp] 457 / 1e-140 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 441 / 2e-134 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10024721 [exp] 438 / 1e-133 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003389 [exp] 415 / 1e-123 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 388 / 6e-114 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10026415 [exp] 379 / 1e-110 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10014905 [exp] 333 / 5e-101 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10042239 [exp] 348 / 6e-100 AT1G45616 395 / 1e-121 receptor like protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128400 [exp] 464 / 5e-141 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G389100 [exp] 369 / 9e-108 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G437700 [exp] 365 / 1e-106 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.012G027600 [exp] 362 / 3e-104 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.016G126900 [exp] 347 / 4e-100 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G010445 [exp] 347 / 6e-100 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.016G120600 [exp] 347 / 5e-99 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.011G055000 [exp] 338 / 9e-98 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.016G127000 [exp] 338 / 3e-97 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G025400 [exp] 338 / 2e-96 AT1G45616 399 / 7e-122 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011039 pacid=23148628 polypeptide=Lus10011039 locus=Lus10011039.g ID=Lus10011039.BGIv1.0 annot-version=v1.0 ATGGCAAATCTATTCTCTTATTGTTTTCCAACTACTATCGTTTCTCTTGTTGTTATTGTAATAACATCATACTTCCATGAAATCCAATGTTCGGAGGAAG ACAGATCCCTTCTCTTACGTCTCAAACATGAAATCTCCATCGATCATGATGAGTATGCTTCTCGGAGTCGAGATTCTCCTACACCTATACCACCGCCAAA AGTTTGGTCATGGAACGGCACTGGAAATCATGAAGACTGCTGCCTGTGGGAAGGAGTCACATGTGATTCCTACTCAGGTCAGGTTGTCGGCCTCGACCTG AGCAGCAGCTTCATTAATGGTGGAGTAGACGACTCCAGTTCCATTTTCCACCTTCGTGACCTCCAGCGCCTTAGCCTGGCTGATAACCATATGAATACCT CTGTCACTCTATTCCCGTCTAGTTTCGATAACCTGTCCGGTTTGACCCATCTCAACCTTTCGAAGACAGGCTTCAGTGGTCCACTCCCATTATTAATTGC TTCATCTAACAGTATTCGGGTTCTCGATTTATCTTCCAATAATTTCGATGGTACTATTCCTGTATCTTACAGCTCTAGCCAGTTTCCATATCTCGAAACG TTGAGCTTGACCAACAACGACTTGCGAGGCAAAATTCCTCGTTCTTTATTCAGTAAGCCATCTCTCTATAAGCTGGCATTAGGATCCAACCAACTAGAAG GGCAGCTCGAAGAACTCCACAACCCCTCGTCTAAACTAAGGGAAATAGACTTGAGTCGTAACAAGCTTCGAGGCAATATTCCATTGTCATTCTTCAATAT CACCACTCTTGTATCCCTCTCAGTTGCTTCCAATGATTTCAGCGGCCGAATCAACCTCGTGAACGTAGCCAACATCGCGGACCTTAAGTTGTTAGACCTC TCAGACAATCACTTCCGAGTCGAGGTTAGTGGTGGCGAACATATGTTATCAGGTATTCTAGCCCTTAAGTTGAGGTCTTGCAATATCGATACGTTTCCTG ATTTCTCATCAGGAAACTACGAAAGCTTGGGATACCTTGATCTTTCGCGAAACAAGATCACAGGAAACATCTCTCCATCCATATGTGATTTGAGAGCTTT GGAAATCCTAGACCTCTCTAATAATCGTCTCGATGGCCTCATTCCGCCATGCTTGACTTCACTTCCCTCTATCCATGTGTTAAGCCTGAGAAATAACCAA CTAAGTGGAATGCTCCCTGAAGGCTTTACACCCAACTGCACTTTGAGAACTCTCGATGTGAATCAGAACCACCTCCGCGACCAACTTCCAGAATCTTTAA GCTTGTGTAAAGGGCTAGAAGCTATAGATGTTGGGAAAAATTACTTGACGGGACAATTCCCAACCTGGTTGGAGAATTTGCCCTTGTTGCGAATTCTCAT CTTGCGCTCCAACCAATTTGACGAAACTATAGATTCTCGAAACATGGATGCCTTCTCTCAACTCCAGATATTTGATGTTTCTTCCAACAAGTTTGTGGGT AAGCTGCCTTCATGGTGGTTCATAAGTTGGAAAACAATGAAGAAGCCCCCGGATTCGAGAGAAGCTATGCATTCCACTTACTCTTCGCGAAGCAATGCAT CTGTCACGCCTTTGTTTGAAGAGTATTACCAAAATTCAGTTACGGTAACCAAGGGAGGAATTGAATTGGAGTTTATCAGGATCCTCACTTTTCTCATCTT AGTTGATGTATCCAACAACAGATTCACTGACGAAATTCCTGAAGCAATAGCGAATCTCAAATCACTACGTCTTCTCAACCTCTCCAACAACCATTTCACA GGTCGCATCCCGGAATCGTTTGGACAACTAAGCTCGCTCGAGTCATTGGACCTCTCGTCAAACAAGCTGTCGGGCTACATCCCCACAAAACTTTCAGAGC TCATATTTCTAGAGTACCTAAACCTGTCACGGAATATGCTTATGGGCGAAATACCTCGAGGACGCCAATTCGATACTTTCGAAGCAGAGTCCTACCAAGG GAATCCTGGACTGTGTGGCTTGCCATTGCCTAAATCCTGCAATAACAATGTAGAATCCACATCTATGAGCACCGGTTCCAAAGCTGATGCCGAAGACAAA GAATTATGGCATGATTTGATCGATTGGGAGTCCTATCGAGTCGGGGTCGCATGTGGAGGCGGGGCAGGACTCGTTGCTGGGTTTGTAGTAGCCTATCTTG CGTTTGGAAATATCTTTCCGAAACATGAACTGCGAACAGTTGGTCGTTCTGCACTACGCTGCTTCATTGATGGCGGAATCAAAAGCTCTAGCTCCATCTT CCTCTTTCGTCATCTCCGGAGTCTTAGCCTTGCTGATAACTATTTCCGTGGCTCAGCTTATCCTTCTGGTTTTAGTAATTTGTCCAGATTGACCCATCTC AACCTTTCAAATGCTGGCTTTGCGAGTCCGATTCCAGAGCATGAGATTTCACTTCTGGGAAATTTGGTGTCTCTTGATCTTTCTTCTTATTATTATTATT CAAGTGTAGACCTGTGGAAGCTAGTCAAGAACCTGACGCAGCTCAAAGTGCTCTATCTGGATGGAATAGACCTCAACCAAACCATCAACAACCAGTCTTT CTCAACCTTGCCTGATGATCTCCATAAATTAAGCCTGGTGAATTGCGACTTCACTGGAGAAGCACTACAATATTCATCTCTTTTACACTTGAAATCACTC ACCCATTTGATGCTATCAAACAATGATCTTGCCTGGAATATCTCTGGGCATTCATTCATCCAGTTTCCTTATCTCATAAATCTCCAGCTAAACAACTGTG GTCTGTTTGGAAGATTTTCCAAAAACGTCTTTCTCATTCCCAACCTAGAATTTCTTGATGTTTCTTCCAATCATCAACTTTTCGGGACTCTCCCTCCCTT CCCTGCTGGTAGCAACTCACTACAATCTATCAACCTTTCAGGAACATTATTTTCCGGAGAAGTACCTGATTCCATAAGCTTTTTAGTGTCGTTACAGGAA CTCCGGCTTGAATATTGTCACTTCCATGGAAAGTTCCCAACTAATATTTTCTTGAATCCCAAATTGCAATATATTGATGTATCCAACAACTCCCTTCTCA CAGGTACTCTGCCTGAATTCCCTATAGCCGGTAGCCCACTTGAAATTATCGGCCTTTCAAATACAAAATTTTCTGGGAAACTACCTGATTCCATCCATAA TTTAGTATCCTTGAAGAAATTATATCTCTCGAACTGCATGTTTCACGGAGTAGTCCCATCTTCGATTGTCAGGCACACCGAATTACTCAGTCTTGACTTT TCCGGAAACAACTTCAGCGGTCCACTTCCATTATTGGGTCCATCTTACGATATTCAGTATCTCGACTTTTCTTCCAATAATTTCAATGGAAGCATTCCCC TATGTTATGGCAATGACCAATTTCACGATCTTCAATGGTTGTATTTGAGACACAACAATTTAAAAGGACATATTCCTCCCTCTTTATTCAGTCTGCCATA TATCAGGGGGTTGGAACTGGAATGGAATGAACTAGAAGGGCAGCTGGAAGAATTCTACAATTTCTCCTCTTCTCTAGAGAAAATAGACTTGAGTCATAAC AAGCTTCGAGGCCATCTTCCACCGTCAATCTTCAATGGAAGCAGTATGTATTACTTCACGGTTGCTTCGAACAACTTCAGTGGCAAAATCAACTTAATGG ATACAGCAAAAATGTTGGATCTTCGCTTGTTAGACCTCTCAGACAACCACTTCCAAGTGGAGGCTACTGGTGAGCTAATATTATGGAGCCTGGAAGTTGT TCGGTTGAGTTCATGCAATATAGATTCATTTCCCAATTTCTTAAGAAACTCCTCTGGCTTGAAATACCTGGATCTTTCACAAAACATGATCAAGGGAAAT ATCTCTACATTCATTTGTGATATGCGAGATTTAGAAATCTTAGATCTCTCCACCAACCATCTCAGTGGCTCCATTCCACCATGTTTGGCTTCACTTCCCA ATCTCCGTGTGCTAAGCTTAAGAAATAACCAACTCAGTGGGATGCTCCCTGGAGGTTTTACACCCAACTGCACTTTGAGAACTCTCGATGTGAATCAAAA CCGCCTCCGAAGCCAACTTCCTGAATCTCTAGGCTTGTGTAGAGGTTTGGAAGTAATAGATGTTGGAAAAAATTACTTAAAGGGGAAATTTCCAGTTTGG TTGGAGAATTTTCCTTCACTGAGAGTGCTCAACTTGCACTCCAACAAGTTTAGTGGTTCTATTGATTCTCAAAACCAGACTGCATTCCCTCTGCTCCAAA TATTTGATGTTTCCTCTAACAAGTTTGTGGGGAAAATGCCTTCAGGGTGGTTCGTAAGTTGGAAAAGAATGATGACTACTCCAACAGGTTCCCATAGTGA AGTTATTGGTTCCACTTATTCCGAATACTTCGGGTTCAATCTTGAAAGTTCTCCTGAGTTCCGTTACCAAGATTCAGCTACAATAACTGTGAAAGGAACG GAAACAGAGTACAAACAGATCAGCACTATCTTTAGCTTACTTGATGTATCCAACAACCAATTCACTGGCGAAATTCCTCAAGCAATATCTCGTCTCGAAT CACTGCATCTGCTCAACCTCTCCAACAACCATTTCACCGGTCACATCCCAGGATCATTCGGTCAACTGAGACAGCTGGAATCACTGGACCTTTCATCAAA CAAGCTCTCCGGCAACATCCCAACACAACTTACAGAGCTCACGTTTCTGTCAAAATTGAACTTATCGCATAATTCACTCACAGGGGGAATACCTCGAGAA CGTCAATTCGGAACTTTCGAAGAAGAATCTTATGAAGGGAATCCCGGATTGTGTGGCCTTCCATTGCCTAAACCTTGCTATAATGTGAAATCCCCATCTC TAAGCAACAAATCCGATGCCAAAGCCAAAGAAAGGAATAGTGTGATCGACTGGGAGTACTATCGAGTTGGGATCGCATGTGGAAGCGGGACAGGACTCAT TGCTGGGTTCGTGGCGGCCTATCTCGTGTTTGGAAATTTCTTCATCCAGAAACGAAGAGTCCGCCGTTATGCTGTTCGCCCTCTAAGGACCTGA
AA sequence Show only first row Show all	>Lus10011039 pacid=23148628 polypeptide=Lus10011039 locus=Lus10011039.g ID=Lus10011039.BGIv1.0 annot-version=v1.0 MANLFSYCFPTTIVSLVVIVITSYFHEIQCSEEDRSLLLRLKHEISIDHDEYASRSRDSPTPIPPPKVWSWNGTGNHEDCCLWEGVTCDSYSGQVVGLDL SSSFINGGVDDSSSIFHLRDLQRLSLADNHMNTSVTLFPSSFDNLSGLTHLNLSKTGFSGPLPLLIASSNSIRVLDLSSNNFDGTIPVSYSSSQFPYLET LSLTNNDLRGKIPRSLFSKPSLYKLALGSNQLEGQLEELHNPSSKLREIDLSRNKLRGNIPLSFFNITTLVSLSVASNDFSGRINLVNVANIADLKLLDL SDNHFRVEVSGGEHMLSGILALKLRSCNIDTFPDFSSGNYESLGYLDLSRNKITGNISPSICDLRALEILDLSNNRLDGLIPPCLTSLPSIHVLSLRNNQ LSGMLPEGFTPNCTLRTLDVNQNHLRDQLPESLSLCKGLEAIDVGKNYLTGQFPTWLENLPLLRILILRSNQFDETIDSRNMDAFSQLQIFDVSSNKFVG KLPSWWFISWKTMKKPPDSREAMHSTYSSRSNASVTPLFEEYYQNSVTVTKGGIELEFIRILTFLILVDVSNNRFTDEIPEAIANLKSLRLLNLSNNHFT GRIPESFGQLSSLESLDLSSNKLSGYIPTKLSELIFLEYLNLSRNMLMGEIPRGRQFDTFEAESYQGNPGLCGLPLPKSCNNNVESTSMSTGSKADAEDK ELWHDLIDWESYRVGVACGGGAGLVAGFVVAYLAFGNIFPKHELRTVGRSALRCFIDGGIKSSSSIFLFRHLRSLSLADNYFRGSAYPSGFSNLSRLTHL NLSNAGFASPIPEHEISLLGNLVSLDLSSYYYYSSVDLWKLVKNLTQLKVLYLDGIDLNQTINNQSFSTLPDDLHKLSLVNCDFTGEALQYSSLLHLKSL THLMLSNNDLAWNISGHSFIQFPYLINLQLNNCGLFGRFSKNVFLIPNLEFLDVSSNHQLFGTLPPFPAGSNSLQSINLSGTLFSGEVPDSISFLVSLQE LRLEYCHFHGKFPTNIFLNPKLQYIDVSNNSLLTGTLPEFPIAGSPLEIIGLSNTKFSGKLPDSIHNLVSLKKLYLSNCMFHGVVPSSIVRHTELLSLDF SGNNFSGPLPLLGPSYDIQYLDFSSNNFNGSIPLCYGNDQFHDLQWLYLRHNNLKGHIPPSLFSLPYIRGLELEWNELEGQLEEFYNFSSSLEKIDLSHN KLRGHLPPSIFNGSSMYYFTVASNNFSGKINLMDTAKMLDLRLLDLSDNHFQVEATGELILWSLEVVRLSSCNIDSFPNFLRNSSGLKYLDLSQNMIKGN ISTFICDMRDLEILDLSTNHLSGSIPPCLASLPNLRVLSLRNNQLSGMLPGGFTPNCTLRTLDVNQNRLRSQLPESLGLCRGLEVIDVGKNYLKGKFPVW LENFPSLRVLNLHSNKFSGSIDSQNQTAFPLLQIFDVSSNKFVGKMPSGWFVSWKRMMTTPTGSHSEVIGSTYSEYFGFNLESSPEFRYQDSATITVKGT ETEYKQISTIFSLLDVSNNQFTGEIPQAISRLESLHLLNLSNNHFTGHIPGSFGQLRQLESLDLSSNKLSGNIPTQLTELTFLSKLNLSHNSLTGGIPRE RQFGTFEEESYEGNPGLCGLPLPKPCYNVKSPSLSNKSDAKAKERNSVIDWEYYRVGIACGSGTGLIAGFVAAYLVFGNFFIQKRRVRRYAVRPLRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	1.7	0.9592
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	3.9	0.9418
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	4.2	0.9536
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	5.2	0.9434
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	6.0	0.9434
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	7.3	0.9269
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10000835 [exp]	8.4	0.7603
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	9.5	0.9174
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10004369 [exp]	9.8	0.9130
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	10.1	0.8824

Compare expression of checked genes

Lus10011039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.