Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18010 622 / 0 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 287 / 3e-89 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT3G63240 275 / 7e-85 DNAse I-like superfamily protein (.1) AT2G32010 266 / 2e-81 CVL1 CVP2 like 1 (.1.2) AT1G05470 266 / 8e-81 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G37440 257 / 4e-80 DNAse I-like superfamily protein (.1.2) AT1G71710 262 / 5e-79 DNAse I-like superfamily protein (.1.2) AT5G65090 240 / 8e-73 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 239 / 2e-72 DNAse I-like superfamily protein (.1.2) AT2G01900 225 / 2e-67 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003010 [exp] 1048 / 0 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10040107 [exp] 709 / 0 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028697 [exp] 310 / 5e-97 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 298 / 1e-92 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 277 / 1e-87 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 278 / 2e-85 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 266 / 2e-81 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 250 / 9e-76 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 239 / 6e-75 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145900 [exp] 726 / 0 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.003G088300 [exp] 706 / 0 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G197800 [exp] 304 / 5e-95 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G063500 [exp] 294 / 3e-91 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 278 / 5e-86 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 278 / 6e-86 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 278 / 1e-85 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 275 / 9e-85 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G011000 [exp] 251 / 1e-76 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 250 / 3e-76 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10011041 pacid=23148645 polypeptide=Lus10011041 locus=Lus10011041.g ID=Lus10011041.BGIv1.0 annot-version=v1.0 ATGAAGGTCAAGAAAGGGAAGCGATCTGAGGGGTTCTGGCCGTCTCTAGTGATGAAGAAATGGCTGAACATTAAGCCCAAGGTGTATGATTTCAGCGAGG ATGAGTTCACAGAGAATGACAGTGAAGATGATGTTTGTTCTCTTAAGGATGAAAGTGTGAATAATAAAGTGTGTGAAGATCCTCAAGTGAAGCAGTATGA ATCGCACCATCACCAGAATGCACCTCCGAAGGGCTATCCACTGAGACACAGGAGAGGGAAGTCGGAAACGCTGCGGAGTCAGTACATAAACACTAAGGAA GTGAGGGTGACAATAGGGACTTGGAATGTTGCTGGTAGGATTCCGAATGATGATCTTGAGATTGAGAGCTGGCTTTGCACTGAAGAACCAGCAGATATGT ATATCATCGGTTTCCAGGAGGTAGTCCCTTTGAATGCCGGCAATGTTTTCGGAGCAGAAAGCAACAGGCCGATCCGAAAATGGGAGGCGATCATCCGGAA GACGCTGAACAAATCGTGGCAGCCTGAAATCGAACAACAAAGGAGTTTCAGCGCTCCACCTTCTCCAGTGGCTGCTCTCCCACTAGATTGCGAAATCGGA CCAGCTAGAGAAGAAGCTTGTAGTACAAGCAAGAACCTACACCTGAGGATGATCTACGGAATCGACTGCGACAGTAGATTCGACTGGCCCGAACATCCAC TAGACTATCCAGCTCCTCCACAGCCCTTCAAATTAAGGAGGGTACTCAGCAGTTCATCTTTGGAACACACCATTAGTGGTGTTAGTAGGCTGAGAAGAAG TAACCATAGCTCCGGAGATCTTGGATTGCTGTGGCTAGATCAGCAGCAAGAGGAGGTGATAGCTGAGCTTCCCGAAATCATGTCTGAGGAGGAGGAGGAG GACGACGACGACGAATTCGTGGAACTACCGAGTTGCGATCGAGATTCCGGTGTCGTTGTCAAGCATTCGAAGTATGTACGGATTGTTAGCAAGCAAATGG TGGGGATATATCTATCGGTTTGGGTGAGAAAGAAGTTGAGGAGACATGTTAACAACTTGAAGGTGTCTCCTGTTGGAGTTGGACTTATGGGTTACTTGGG GAACAAGGGATCGGTGTCAATCAGCATGACTCTGTACCAGTCAAGGATGTGCTTTGTATGCTCTCATCTCACCTCAGGCCAGAAGGATGGTGCCGAACAG AGGAGAAACGCCGACGTCCATGAGATCATTCGCAGGACTCATTTCTCATCCGCCATTGACAAAGACCAACCCCAGACCATCCCAGCGCACGATCAAATAT TCTGGTTTGGTGACTTGAACTATCGACTCAACATGTTGGACGCAGAAGTAAGGAAGCTAGTTGCCCTGAAGCAGTGGGATGAACTCAAAAACAGTGATCA GTTGACTAGGGAGCTTCGAAGCGGGAACGCATTCGACGGATGGAGAGAAGGAACCATAAACTTCCCACCAACATACAAGTACGAGATAGACACTGATAGA TACATAGGGGAGAATCCAAGAGAAGGGGAGAAGAGCAGATCCCCTGCATGGTGTGATCGAATACTTTGGCTAGGAAAAGGAATAAAGCAAGTGTTGTACA AATGTGCAGATATTCGAGTATCAGATCACAGACCGGTTAGTTCGATGTTCGTCGTTGAAGTCGAGGAGTTTGACCATGGCAAGCTCAAGAAGGCCCTGAA TGTGAACAGTGCAGCTGTTCATCCCGCCATTTTCCTGTTCGACGACGAAGAATCATGA
AA sequence Show only first row Show all	>Lus10011041 pacid=23148645 polypeptide=Lus10011041 locus=Lus10011041.g ID=Lus10011041.BGIv1.0 annot-version=v1.0 MKVKKGKRSEGFWPSLVMKKWLNIKPKVYDFSEDEFTENDSEDDVCSLKDESVNNKVCEDPQVKQYESHHHQNAPPKGYPLRHRRGKSETLRSQYINTKE VRVTIGTWNVAGRIPNDDLEIESWLCTEEPADMYIIGFQEVVPLNAGNVFGAESNRPIRKWEAIIRKTLNKSWQPEIEQQRSFSAPPSPVAALPLDCEIG PAREEACSTSKNLHLRMIYGIDCDSRFDWPEHPLDYPAPPQPFKLRRVLSSSSLEHTISGVSRLRRSNHSSGDLGLLWLDQQQEEVIAELPEIMSEEEEE DDDDEFVELPSCDRDSGVVVKHSKYVRIVSKQMVGIYLSVWVRKKLRRHVNNLKVSPVGVGLMGYLGNKGSVSISMTLYQSRMCFVCSHLTSGQKDGAEQ RRNADVHEIIRRTHFSSAIDKDQPQTIPAHDQIFWFGDLNYRLNMLDAEVRKLVALKQWDELKNSDQLTRELRSGNAFDGWREGTINFPPTYKYEIDTDR YIGENPREGEKSRSPAWCDRILWLGKGIKQVLYKCADIRVSDHRPVSSMFVVEVEEFDHGKLKKALNVNSAAVHPAIFLFDDEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10011041 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	5.2	0.7928
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	7.7	0.7368
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	16.9	0.7462
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	17.3	0.7691
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	19.2	0.7445
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	19.4	0.7370
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	20.7	0.7350
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	24.8	0.7267
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	26.1	0.7314
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	26.5	0.7340

Compare expression of checked genes

Lus10011041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.