Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32400 338 / 2e-117 TOM2A tobamovirus multiplication 2A (.1.2.3) AT4G28770 92 / 8e-22 Tetraspanin family protein (.1.2) AT2G20740 89 / 2e-21 Tetraspanin family protein (.1.2.3) AT2G20230 88 / 3e-20 Tetraspanin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030939 [exp] 439 / 3e-157 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 411 / 8e-147 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 316 / 9e-110 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3) Lus10022841 [exp] 104 / 3e-26 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10039817 [exp] 98 / 6e-24 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 96 / 3e-23 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10011910 [exp] 96 / 3e-23 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087800 [exp] 393 / 4e-139 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.001G146100 [exp] 386 / 2e-136 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.002G253500 [exp] 100 / 2e-24 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.013G134200 [exp] 97 / 3e-24 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 89 / 5e-21 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 81 / 4e-18 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 76 / 3e-16 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10011042 pacid=23148654 polypeptide=Lus10011042 locus=Lus10011042.g ID=Lus10011042.BGIv1.0 annot-version=v1.0 ATGGCTTGCAGGGGGTTCTGGGAGTGCTTACTGAAGCTGCTCAACTTCTTGTTAGCCGTTGCTGGTCTAACTATGGTTGGCTATGGGATTTATTTGTTCG TCGAGTATAAGCATGCGACAGATGATGTGACTTTTCCCCCTTCAAGTAGTCCGGACAGTTTGATACAGCTGGGTCGCCCTATGTTTATCACTGTTTCGCT TTCTGAGAGCATCCTTGATAAGTTGCCAAAGGCTTGGTTCATATACTTGTTTATTGGTGTTGGAGTGATCCTCTTCGTTGTCTCTTGCTGTGGTTGTATT GGAGCTGTGACTAGGAACGGTTGCTGCCTAAGCTGTTACTCAGTCCTGCTTTTCTTACTGATATTGGTGGAGCTGGGATGTGCAGCATTCATATTTTTCG ACAAAAGTTGGCAAGAACAACTTCCAGTTGACAAGACAGGGAATTTCGACATGGTATATGGCTTTCTGAAAGAGAACTGGGAAATCGTCAAGTGGGTTGC TCTTGGAGTAGTTGTGTTTGAAGCTTTGATATTTGTGTTGGCCTTGGTGGTCAGAGCAGTAAACCGACCAGTAGAGTACGATAGTGATGATGAACTTATA GCTCCAAGGCAGCAAATCCGACAGCCATTGATGAACAGGCCACCGTTGCCTCCTGCAACAGGTGTCCCCGTTGCTGGAACTCTTGACCAGCGTCCTAGCA GAAACGATGCATGGAGTACTCGTATGAGGGAAAAGTATGGTCTCGACACTGCGGAGTTCACATACAACCCGTCGGAGTCCCATAGGTATCAGCAAGTGTC GGCGCAGCCTACGGAAGAAAGAAGCCGGTGCACAATCATGTGA
AA sequence Show only first row Show all	>Lus10011042 pacid=23148654 polypeptide=Lus10011042 locus=Lus10011042.g ID=Lus10011042.BGIv1.0 annot-version=v1.0 MACRGFWECLLKLLNFLLAVAGLTMVGYGIYLFVEYKHATDDVTFPPSSSPDSLIQLGRPMFITVSLSESILDKLPKAWFIYLFIGVGVILFVVSCCGCI GAVTRNGCCLSCYSVLLFLLILVELGCAAFIFFDKSWQEQLPVDKTGNFDMVYGFLKENWEIVKWVALGVVVFEALIFVLALVVRAVNRPVEYDSDDELI APRQQIRQPLMNRPPLPPATGVPVAGTLDQRPSRNDAWSTRMREKYGLDTAEFTYNPSESHRYQQVSAQPTEERSRCTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	0	1
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	1.0	0.9487
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	1.4	0.9054
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	2.4	0.8646
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	2.4	0.8913
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	3.5	0.8797
AT5G17190			unknown protein		Lus10031957 [exp]	7.7	0.8508
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	9.5	0.8326
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	9.6	0.8225
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	11.6	0.8031
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	12.4	0.8715

Compare expression of checked genes

Lus10011042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.