Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18030 910 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 848 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G10440 690 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 681 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 657 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 644 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 546 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 512 / 5e-176 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 497 / 5e-170 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 456 / 4e-154 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003014 [exp] 1195 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 846 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 843 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 840 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 838 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 814 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008298 [exp] 681 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 672 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 670 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087600 [exp] 951 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 930 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 843 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 827 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 808 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G137300 [exp] 680 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 678 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 671 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 669 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 665 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10011045 pacid=23148642 polypeptide=Lus10011045 locus=Lus10011045.g ID=Lus10011045.BGIv1.0 annot-version=v1.0 ATGGGCAGTAAGAGCAACCTGAACAACGGGCTTCGTGCGCGAAGCCCGTTGTCCATATTTCTGATCCTCTGCCTCTGCTGCTTCTCCTACCTATTAGGAA CATGGCAGAGGAGCGGGTTCGGGAAAGGTGACACAATCGCCAAACAGATAGCTCATCAACAAACCGATTGCGATGTCCTCAAGAACCTCGACTTTGACTC TCACCACAACATCGAGATCCCTGAGCAGACCAAAGTCAACAAGTATAAGGTCTACAAACCTTGCGATGCAAGTTTCACGGATTACACTCCGTGCCAGGAA CAGGATCGGGCCATGAAATTCCCGAGGGAGAACATGGCATACAGGGAGAGGCATTGTCCTCCTCAAGAGGAGAAACTGCATTGCCTCGTACCGGCTCCCA AGGGGTACACGGCTCCGTTTCCTTGGCCGAAAAGTCGTGACTATGTTTACTATGCGAATGTGCCGTTCAAGAGCTTGACTGTGGAGAAGGCTAACCAGAA TTGGGTGCAGTATCAGGGCAATGTGTTCAAGTTTCCTGGAGGTGGGACCATGTTCCCTCAGGGTGCCGATGCTTATATCGATGAGCTTGCTTCGGTTATT CCGATTGCTGATGGATCTGTCAGGACAGCTCTTGATACCGGATGCGGGGTTGCGAGCTGGGGTGCATATATGCTGAAAAGAAACGTGTTGGCTATGTCAT TTGCGCCACGAGACAATCACGAAGCGCAAGTACAATTTGCTCTTGAGAGAGGTGTGCCAGCTGTTATCGGGGTTCTTGGGACAATTCGCCTTCCCTATCC ATCAAGAGCCTTCGATATGGCGCAGTGCTCACGGTGTTTGATACCATGGACAGTCAACGATGGAATGTATCTGATGGAAGTCGACCGAGTTCTTAGACCG GGTGGATACTGGGTCCTATCCGGTCCTCCGATCAACTGGAAGACCTACTATAAGACGTGGAAACGAACCAAGCAGGATCTCGCGGCGGAGCAGAAATCGA TCGAGGATCTTGCCGAAAGCCTTTGCTGGGAGAAGAAGTACGAGAAGGGCGACATTGCTATCTTTAGGAAAATGACTGAAAATGAGAACTGCAAGAAGTC TGTCAACTTGTGTGACTCGGTGAACGATGATGATGTCTGGTACAAGGAAATGGAGAAGTGCAAAACCCCTTACCCGGAGAAAACAACCGGAAGCGAGCTA AAGAAGTTCCCACAGAGACTGCTCGCAGTGCCTCCCCGAATCTCGGACGGACTCATCGAGGGAGTGACGGAAGAGTCTTACCAAGAGGACAACAAGCTGT GGAAGAAGCGTGTAACTGGTTATAAGAGAATCAACAGGTTGATTGGCACCGGAAGGTACCGAAATGTGATGGACATGAATGCTGGACTCGGTGGATTCGC TGCAGCACTCGAATCGCCAAAGTCTTGGGTGATGAATGTCATCCCGACGATCCAGAAGAACACTCTTGGCGCTGTCTACGAGCGTGGCTTGATCGGGATA TACCACGACTGGTGCGAGGGATTCTCGACGTACCCTAGGACTTACGACCTTATTCATGCCGACCACTTATTCAGCCTATACAAGAACAAGTGCAAAGCTG AAGACATACTACTGGAAATGGATAGAATCCTGCGTCCTGAAGGGACGGTACTGGTCCGCGATGAGGTCGATACCGTAAACGAGGTAATGGGTATCATCAA GGGGATGAGATGGGATACAAGAATGCTGGACCATGAAGATGGCCCTCTTGTAGATGAGAAGATACTAGTTGGTGTCAAGCAGTACTGGACTGCCGGCAGC TCCAAGAACAGTACTGAAACCGATGAATAG
AA sequence Show only first row Show all	>Lus10011045 pacid=23148642 polypeptide=Lus10011045 locus=Lus10011045.g ID=Lus10011045.BGIv1.0 annot-version=v1.0 MGSKSNLNNGLRARSPLSIFLILCLCCFSYLLGTWQRSGFGKGDTIAKQIAHQQTDCDVLKNLDFDSHHNIEIPEQTKVNKYKVYKPCDASFTDYTPCQE QDRAMKFPRENMAYRERHCPPQEEKLHCLVPAPKGYTAPFPWPKSRDYVYYANVPFKSLTVEKANQNWVQYQGNVFKFPGGGTMFPQGADAYIDELASVI PIADGSVRTALDTGCGVASWGAYMLKRNVLAMSFAPRDNHEAQVQFALERGVPAVIGVLGTIRLPYPSRAFDMAQCSRCLIPWTVNDGMYLMEVDRVLRP GGYWVLSGPPINWKTYYKTWKRTKQDLAAEQKSIEDLAESLCWEKKYEKGDIAIFRKMTENENCKKSVNLCDSVNDDDVWYKEMEKCKTPYPEKTTGSEL KKFPQRLLAVPPRISDGLIEGVTEESYQEDNKLWKKRVTGYKRINRLIGTGRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTIQKNTLGAVYERGLIGI YHDWCEGFSTYPRTYDLIHADHLFSLYKNKCKAEDILLEMDRILRPEGTVLVRDEVDTVNEVMGIIKGMRWDTRMLDHEDGPLVDEKILVGVKQYWTAGS SKNSTETDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	0	1
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	1.0	0.9470
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	2.8	0.8940
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	3.7	0.9082
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	4.2	0.8969
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	4.5	0.8931
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	7.5	0.8630
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	8.1	0.8605
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	9.5	0.8410
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	12.0	0.8606
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	12.6	0.8080

Compare expression of checked genes

Lus10011045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.