Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46560 325 / 2e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003015 [exp] 718 / 0 AT5G46560 343 / 7e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146500 [exp] 365 / 3e-124 AT5G46560 350 / 1e-118 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09402 [flax] [poplar] MSC Man1-Src1p-C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011046 pacid=23148678 polypeptide=Lus10011046 locus=Lus10011046.g ID=Lus10011046.BGIv1.0 annot-version=v1.0 ATGTCTTCCACACCGAAAAAGCGGCCAAAGCATGGCTCCAAATCCCAAAAGCTATCTCCATCATCTTCTCATCCGATCATGGAACCGCCGGGGTTCCTCT TCCCATCAAGGGAGGAGCTCCCGACGCTCCTCGCCGTCGTCGCAATTGCGTCTTCCGTGGCTTTCAGCTGCCATCTGATCTCCAATTACTCGACTCCCGT TTCCTCGAAGCCGTTCTGCGATGGGAGTATTGACACCTCAGCTGATCCAGATGTATGTGAGCCGTGTCCTGTAAATGGAGGATGTTACGAAGGAGATTTG GTTTGTGATCATGGCTACAGAAGGAAAGGGAATGTGTGTGTGGAAGATGGAGATAGTAACGAAAGAGCTAAGAAACTTTTTGAGCTACTTCAAAGCTATC TCTGTGAGTCGCATGCTCAGTTTTCATGCTATGGAACTGGGAGAATATGGGTGCAAGAGACTGAAATGTGGGAAGATGTACATGAGCGAGTGATGCGAAT TTTCGGCGAGGATAATGCAAGTTACGCCTATGCCAAGAACAAAGCAATGGAGATGGTTGGAGGATTGATGGAGAGGAAGATGAATCCGGAGGGGATTTCA GTGTTGAAGTGTCCGAGTAACTTGGCAGAACGATACAAACCAGTGGATTGTCGTGTTCGTGAATGGGTCTTCGAGTATGCTTTTGTTCTTGTGGCAGCCT GTACTATGGTTGTTGGATCGACATGTTTACTCTGGAAAATCCGCCAGAGATTCTACGCCACAAAGAGGAGCGAGAAGTTGTATCATCAGGTATGTGAGAT TCTCGAGGAGGATGCCATCGAATCAAAAGGAAAAAGTGGTGAATTTGAACCATGGGTGGTAGCTTCTCAGTTACGGGATCATCTGTTATTGCCCAAAGAA AGGAGAGACCCCTTGCTATGGAAAAAGGTTGAGGAGTTGGTACAGGAGGATTCACGAATAGACCGATACCCGAAGCTCGTCAAGGGCGAATCAAAGGTGG TGTGGGAATGGCAAGTGGAAGGGTGTCTGAGCTCTGCAGGCAAGAAAAGCAAAGAGAGAGTAAACCAACGAAGGTCAAATCCCGGCACCGAGGTTTACCC TAATCACAAAAACCACAAGCTGCAATCCGGTAAGGCTCTCAAACGACTTGTTTGCCTACCAGTCGAAGTTTTAAGCACCCACCAAGCTTCTGTTTCCCTC CGCAGGTCGAAAGCTACCATTGTTTTGATCACTGATCACCTCTGTCAAAGTGGTTGA
AA sequence Show only first row Show all	>Lus10011046 pacid=23148678 polypeptide=Lus10011046 locus=Lus10011046.g ID=Lus10011046.BGIv1.0 annot-version=v1.0 MSSTPKKRPKHGSKSQKLSPSSSHPIMEPPGFLFPSREELPTLLAVVAIASSVAFSCHLISNYSTPVSSKPFCDGSIDTSADPDVCEPCPVNGGCYEGDL VCDHGYRRKGNVCVEDGDSNERAKKLFELLQSYLCESHAQFSCYGTGRIWVQETEMWEDVHERVMRIFGEDNASYAYAKNKAMEMVGGLMERKMNPEGIS VLKCPSNLAERYKPVDCRVREWVFEYAFVLVAACTMVVGSTCLLWKIRQRFYATKRSEKLYHQVCEILEEDAIESKGKSGEFEPWVVASQLRDHLLLPKE RRDPLLWKKVEELVQEDSRIDRYPKLVKGESKVVWEWQVEGCLSSAGKKSKERVNQRRSNPGTEVYPNHKNHKLQSGKALKRLVCLPVEVLSTHQASVSL RRSKATIVLITDHLCQSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46560			unknown protein		Lus10011046 [exp]	0	1
AT5G08010			unknown protein		Lus10040520 [exp]	2.0	0.8943
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	2.4	0.8727
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	3.5	0.8487
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	4.0	0.8674
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	4.5	0.8666
AT1G55170			unknown protein		Lus10034321 [exp]	5.7	0.8491
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	7.5	0.8457
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	8.3	0.8690
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	8.5	0.8639
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	8.8	0.8182

Compare expression of checked genes

Lus10011046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.