Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 121 / 3e-30 F-box/RNI-like superfamily protein (.1) AT3G58940 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G56810 64 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 62 / 2e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G00315 59 / 4e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 54 / 6e-09 F-box family protein (.1) AT4G10400 57 / 1e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G15060 56 / 5e-08 unknown protein AT4G03220 55 / 5e-08 Protein with RNI-like/FBD-like domains (.1) AT4G09920 54 / 5e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003016 [exp] 434 / 2e-151 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 302 / 6e-98 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 249 / 1e-78 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 185 / 4e-52 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10013071 [exp] 161 / 4e-43 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10011047 [exp] 128 / 3e-36 ND 36 / 0.002 Lus10029077 [exp] 129 / 5e-33 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 112 / 6e-27 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 104 / 2e-24 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107600 [exp] 123 / 5e-31 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 116 / 1e-28 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 107 / 2e-25 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 102 / 1e-23 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 83 / 4e-17 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.008G110400 [exp] 80 / 4e-16 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 56 / 4e-08 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 55 / 6e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G011200 [exp] 54 / 1e-07 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.016G106600 [exp] 52 / 4e-07 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011048 pacid=23148694 polypeptide=Lus10011048 locus=Lus10011048.g ID=Lus10011048.BGIv1.0 annot-version=v1.0 ATGGATGTAGACAGAATCAGCAGCTTACCTGACAGTATTCGAGAGCTTATACTAACCTTCATGCCCTTACGAGATGCAGCCAGGGCCAGCATCCTCTCAA CAAGCTGGAGGAACATGTGGATGAATCTGCCAACTCTCGTCTTCGACGAAACCTTTTTTCATGGTTCGTCGATAGAGAAAATGATGCTTGATCTCTTTAG AGTTCTCATGCTTCATCGTGGACCTTTGAGAGAGTTGTCTCTTTCCAATCTGGTACCAGAAGAACAACACATTGACCAAATAATGATGTTTCTTCAAGAC AAAGGTGTTGAGAGTCTAACCATCAAGACCAATGGATACAAGCTTTCAAGCTCTCTGTTCTCTTCACCATCATTTACACGGCATATGAAGTCATTGCACT TGTCTGGCTGTCGTTTCCCAATATCATACTCCACTCTTTTGTTCGAGCAATTCGGTATGCTCACCGTTCTCGAGCTTAGGAATGTGAAGCTGATGGACGA CTCTCCGACTACCCTTTGGATCTTTCGATCTCGGTTGCTTTCAGCTTTGACCTTGGATGGCTTCGGAGGACATTCTCAGGGACCTTCCATTTCGATAGAG GCTCCAAGGCTTGAGTATTTCAACTTTGTTGGGAACTTTGGCTTTCTCTATTTGAAGGATTCTTCCTGCCTTAAAAAGGCTATCCTCCACAAAGAAGCTA CTTTCCCGATGGGCTGGAACGCCTACTCAATACTCAAAGTATGGGGTGGCCTTGCCGCCGTTGAATCGCTTTCTGTGTCCGGCCATTTCTGTAGGTACCT TGCATTACCGAGAGCCAAATCGGTGTTTGTAAGCCAACTGATCCAGTGGGAAATGCTAAGGGACATGACCTTCGATGACATTTGTTTGAGTAGACGTGGC CATTCATGGTCTCTTCTTCACATTTTGAGGAGTTCACCTAATCTGCAACGCCTTATAATCCAGATGACGAAGGCTATGGATGCGTCACGCTTGGGTAATT CCGTAGGAGTTGGAACACTCCAAAGCTGGATAGAAGATGAAGATGGTTTCTCCGTGTACGGGCTTAGACGACTGAAGAGAGTGGAAGTGAAGAATCTGAA AGGTACAAGGCATGAGATTACCTGGATTAGATGGTTATTGAATTACTCACCAGCACTCGACGAGATGGAAATCATGCTGTCTGATACATTATCAGGTATG GAAACCATATCGATTCTGAAAGAGCTGAATGGACTTCGGAGATCGTCTGCCATAGCACGAATCATAATTGATTGA
AA sequence Show only first row Show all	>Lus10011048 pacid=23148694 polypeptide=Lus10011048 locus=Lus10011048.g ID=Lus10011048.BGIv1.0 annot-version=v1.0 MDVDRISSLPDSIRELILTFMPLRDAARASILSTSWRNMWMNLPTLVFDETFFHGSSIEKMMLDLFRVLMLHRGPLRELSLSNLVPEEQHIDQIMMFLQD KGVESLTIKTNGYKLSSSLFSSPSFTRHMKSLHLSGCRFPISYSTLLFEQFGMLTVLELRNVKLMDDSPTTLWIFRSRLLSALTLDGFGGHSQGPSISIE APRLEYFNFVGNFGFLYLKDSSCLKKAILHKEATFPMGWNAYSILKVWGGLAAVESLSVSGHFCRYLALPRAKSVFVSQLIQWEMLRDMTFDDICLSRRG HSWSLLHILRSSPNLQRLIIQMTKAMDASRLGNSVGVGTLQSWIEDEDGFSVYGLRRLKRVEVKNLKGTRHEITWIRWLLNYSPALDEMEIMLSDTLSGM ETISILKELNGLRRSSAIARIIID

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	1.7	0.9666
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	2.6	0.9717
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	3.5	0.9707
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	3.6	0.9413
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	4.0	0.9661
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	4.2	0.9567
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	4.7	0.9419
					Lus10011047 [exp]	4.9	0.9415
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	5.3	0.9511
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	6.3	0.9634

Compare expression of checked genes

Lus10011048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.