Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22740 234 / 2e-67 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 224 / 2e-63 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G47150 147 / 3e-39 YDG/SRA domain-containing protein (.1) AT2G33290 145 / 2e-36 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G04940 141 / 3e-35 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G47160 132 / 3e-33 YDG/SRA domain-containing protein (.1) AT1G73100 130 / 1e-31 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 126 / 2e-30 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT5G13960 122 / 5e-29 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G17770 111 / 2e-25 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003017 [exp] 1000 / 0 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 263 / 2e-76 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 251 / 3e-72 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 230 / 8e-66 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 140 / 6e-35 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10032528 [exp] 132 / 3e-33 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 135 / 4e-33 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 134 / 1e-32 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10043211 [exp] 128 / 7e-32 AT2G35160 192 / 3e-54 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 229 / 2e-64 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 143 / 6e-36 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 143 / 1e-35 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.012G115500 [exp] 140 / 1e-35 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 142 / 2e-35 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.008G173100 [exp] 141 / 4e-35 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.006G027600 [exp] 138 / 3e-34 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 136 / 2e-33 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.015G111884 [exp] 125 / 7e-31 AT2G35160 167 / 3e-45 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.014G143900 [exp] 117 / 2e-27 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10011049 pacid=23148672 polypeptide=Lus10011049 locus=Lus10011049.g ID=Lus10011049.BGIv1.0 annot-version=v1.0 ATGCAATCGAAATCGACGAATGTGGTGTCGTCTAGGGTGCAATCCGACGGGTTTGTATTGGAGATGGAGAAGCCAAAGTATAAGAGGAGGAGAGTTTTGG GTGTAAGGACTTTCCCTCCTGGCTGTGGTCCAAATGCTGTTCCAATACCAGCGAATTCGGTGACTGAATCTCACGGTCTAGCTGTTTCTTCCGGTGGTGA GACTGGCGACCCGGTTGCATTGGAGAACGGATCCGATGGTTTGAAGCAGGATATGGATTCCGTAGCTTTGGAGAAGGATGTTCTTGAGCAAACTGATCAT GACCAGTTCAAGGTCGATTCGATGCCGAATGGTGAAGGAGTTCCAAATGATGTTATGATCGAGATTAGAAGCAATGCTTGTGGTGACGATTCTCTTGAGC AAATGGATCATGTTAAGCCTAATGCTGATGATGAACTGCCATCTGAGGAACTGGAATCAGAGAACAATCTGGGGGTTGATTCTCCAGCAGAAAGTTCATC GATGAATAATGCAGAAGAGCTTACTGATCCAGATAAAGAAGCTGTTGTTCAGAAGTATCCTCCTAGGAGGAAAATCTCAGGTGTTCGAGACTTCCCTCCG AGTTGCGGAAGAAATGCTAAACCTCCTAGCAAGGTGGAAGTCCAGGAAGACACTGAAACTGCAAAAGCTATCGATACAGATGCTGGAACTCAGCAGGGAA AGGTCCTTGCGCGGAAGTCTTCTCTGGTGAAGCCTAAAGTGGCGAGAAAGTCTGTAATAATGCCACGAGATAGTAAGAAATCATTCTCTTTGGGGAAGAA CCAGATGGATGAGAAGAATCGCGATGATCCTCAATTCGTTCAGAGGCCGACTGATGAAAATGGTGGCTCAACTTCTTCTGATGCTGAGAGAAGCAAGGTT GAAGGCCAGGAAGACTCAGAAACGGGGAAAGATATCGATACAGATGGTGGAGCTCAGTCTGAAAGCGAAGTTCTCAAGGGAAAGGTCCTCGTGCGCAAGT CTTCTTCGGTGAAGCGAGTGGCGAAAAAATCTGTTATAATGCCACTGGATAGTAAGAAATCATTCTACTTGGGGAAGAAGTTGTCACAAAGAGCTGTAGA TGAGAATGGGGATGATCCTCAATTCCTTCGGAGGCCGACTGATACAAATGGTGGCTCAACTTCTTCTAATGCCGAGAGAAGCAAGGTGCAGGAGGTACTG CGATTGTTCCACTCCCTATGCAAGGTATTTGAGGAGGAAGCGAAGACCAACCCGGGAAAGCGAGTCGATTTCCTGGCAGCTGCTGAGCTCAAGAGTCGAG GAAAGCACCTCAACGCCGGCCAGCATATCATCGGATCCGTACCAGGGGTTGAAGTTGGCGACGAGTTTCAGTACAGGCTGGAGCTCCACATCATCGGCCT TCATCGTCCGACTCAAGGCGGCATCGACTTCATAAAGCAGCCTAGGGGCATCGTAGCAATGAGCGTTGTGGCATCGGGTGGATATGACGACAACCTGGAC AACTCGGATGTGCTCGAGTACACTGGCCAAGGAGGGGTCTCGACGAAGGGCAAGCAGCCCGAGGATCAGAAGCTCGAAAGAGGGAATCTTTCGTTGGCGA ATAGTGTTACTGTGAAGAATCCGGTGAGAGTGGTTCGTCGAAGGAATCGGATGATGGATGATGGGAAAGTTGGTAAACTTTATGTGTATGATGGTTTGTA TACTGTGGAGGAGTATTGGCAAGAGACAGGGCCACAGGGGAAACAGGTTTTCAAGTTCCGGCTGGTTCGGATATCTGGTCAACCGGAGGTTGCTTGGAAA CAGTCGAAGAACTCGAAAAAGACTCCCACCGGTCGGAGCATTTTACATGATTGA
AA sequence Show only first row Show all	>Lus10011049 pacid=23148672 polypeptide=Lus10011049 locus=Lus10011049.g ID=Lus10011049.BGIv1.0 annot-version=v1.0 MQSKSTNVVSSRVQSDGFVLEMEKPKYKRRRVLGVRTFPPGCGPNAVPIPANSVTESHGLAVSSGGETGDPVALENGSDGLKQDMDSVALEKDVLEQTDH DQFKVDSMPNGEGVPNDVMIEIRSNACGDDSLEQMDHVKPNADDELPSEELESENNLGVDSPAESSSMNNAEELTDPDKEAVVQKYPPRRKISGVRDFPP SCGRNAKPPSKVEVQEDTETAKAIDTDAGTQQGKVLARKSSLVKPKVARKSVIMPRDSKKSFSLGKNQMDEKNRDDPQFVQRPTDENGGSTSSDAERSKV EGQEDSETGKDIDTDGGAQSESEVLKGKVLVRKSSSVKRVAKKSVIMPLDSKKSFYLGKKLSQRAVDENGDDPQFLRRPTDTNGGSTSSNAERSKVQEVL RLFHSLCKVFEEEAKTNPGKRVDFLAAAELKSRGKHLNAGQHIIGSVPGVEVGDEFQYRLELHIIGLHRPTQGGIDFIKQPRGIVAMSVVASGGYDDNLD NSDVLEYTGQGGVSTKGKQPEDQKLERGNLSLANSVTVKNPVRVVRRRNRMMDDGKVGKLYVYDGLYTVEEYWQETGPQGKQVFKFRLVRISGQPEVAWK QSKNSKKTPTGRSILHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	0	1
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	1.0	0.9235
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	2.0	0.8985
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	2.8	0.8780
AT4G02720			unknown protein		Lus10042601 [exp]	3.0	0.8856
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	6.5	0.8220
AT4G02720			unknown protein		Lus10022052 [exp]	7.1	0.8565
AT3G18310			unknown protein		Lus10023992 [exp]	8.0	0.8456
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	8.8	0.8555
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	14.3	0.8267
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	14.5	0.8088

Compare expression of checked genes

Lus10011049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.