Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46920 1108 / 0 Intron maturase, type II family protein (.1) AT1G30010 720 / 0 Intron maturase, type II family protein (.1) AT5G04050 46 / 0.0001 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) ATMG00520 44 / 0.0004 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003020 [exp] 773 / 0 AT5G46920 572 / 0.0 Intron maturase, type II family protein (.1) Lus10028124 [exp] 741 / 0 AT1G30010 1011 / 0.0 Intron maturase, type II family protein (.1) Lus10042828 [exp] 439 / 7e-148 AT1G30010 617 / 0.0 Intron maturase, type II family protein (.1) Lus10003019 [exp] 246 / 3e-78 AT5G46920 147 / 2e-42 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086801 [exp] 1228 / 0 AT5G46920 1150 / 0.0 Intron maturase, type II family protein (.1) Potri.001G147801 [exp] 1204 / 0 AT5G46920 1140 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 751 / 0 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [flax] [poplar] Intron-mat_II PF01348 [flax] [poplar] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Lus10011050 pacid=23148638 polypeptide=Lus10011050 locus=Lus10011050.g ID=Lus10011050.BGIv1.0 annot-version=v1.0 ATGCATCGTCGTCTGGCCACATTTGTATACAGGCATAGAATTCCAGTAACTACAGCTCTCTCCCCAGCTATAATCTCCGGTCAATTGAATAACCGGAGCT ATGTTTTCGCTATTTTCCGGTTATCTTCCTTTACTCCATCGTACAAACGGTCTCCTGACCCCGACGATCCGACCAACTTGATGAGGGAAGATGGTGTCTC AGTATGTTCGCAAATGTGGATCGAGAACTTCCGAGAACCGGACAGGACGGCCACGAACTTGACCACTTATCTACGCCGGTTCGAGCTGTGGGTGTTGGGT TATCAGAAAGTCTGTGCTGACGAGATTGGAACCTACGTGCCACGTAGCGCTATTCAAAGGTCCGCATTGGAGGATTTGCTTGTGCTTCGAAATGCTGTTC TTGATGGCAGGTTCAAGTGGGGTGCTAGGCTTGATTTCTTCATCAAGTCTCCCAAGGATAAGACCGATTATTCGTCCTTATCCAAGAGAAAGATCAAGGC AATTTTAACGACAACTCAGCCTGCAGCATTCCAGGATAAGATAGTTCAGGAAGTGTTGTTCATGATCCTAGAGCCGGTTTATGAATCCAGGTTTTCGGAC AAGTCGTTCGCGTTCAGGCCCGGTAGGACTGCACATACCGTGCTGAGGGTGATTCGGAGGAGTTTCGCCGGGTATTTATGGTACTTGAAAGGTGACTTGA GCACGGTTCTGGACGGTAGTATGAAGGAGAGCTTTGTGATTGGTGCTTTGATGAGGGACGTTCGAGATAAGAACATCGTCGATCTTGTTAAGTCCGCATT GTCGACACCGGTTATCACAACTGGATTCGAGTTACCGAAGAAGAAGACGAAGAGGAAGCACCAGAAGAAGAGAGTGTTGGCAGAGGATGAACCGAAACCG GATCCATATTGGCTCGATACGTTCTTTGGGTTTGCACCGGAGGAAGCTGAGAAGCAACCTAAATGGGGCCATTGTGGGATTCTTAGCCCGCTTTTAGCGA ATATATGTCTGGATGAATTAGATAGATGGATGGAGAATAAGATCAAGGAGTATTATACTCCGTCGAAAAGCGACGTTATATGGAACAGCCCCGAAGGAGA ATCGGAGCAAGGAAACACATCATGGCCGGAGTTTGTACCGACTAGCGGCCCTGATAAAACCAGGAAGATGAACTATGTAAGATACGGCGGCCATTTTTTG ATTGGTGTCCGAGGACCGAGGTCCGATGCAGCCACTTTGCGAAAGCAACTGATCGAATTCGTTGATCAGAAGTATATGATGAAGCTCGACAACGAAAGTC TTCCGATCGAACACATAACGAAGGGGATAATGTTTCTCGACCATGTTCTCTGCAGGAGAGTTGTGTATCCGACACTTCGATATACTGCCACAGGAGGGAA GATCATCAGCGAAAAGGGCGTGGGGACGCTCTTATCGGTCACCGCGAGTTTGAAACAGTGCATCAAGCAGTTTCGGAAGCTGGATTTTTTGAAAGGCGAT CGAGATCCGGATCCGCAGCCTTGTTTTCGAATGTTCCACGCTACTCAAGCTCATACGAATGCACAGATGAACAAGTTTCTTTCGACGATGGTCGAGTGGT TTAGGTACGCCGACAATCGGAAGAAGATTGTCAACTTTTGTTCTTATATTTTACGAGGATCGCTTGCGAAGCTGTACGCTGCGAAGTATAAGCTACGGTC TCGTGCAAAGGTGTACAAGATCGGTGCTCGGAACCTTAGCCGTCCTTTAAAAGAGAAGAAAGGTTCGTCGCCAGAGTACCACAACTTGCTCAGAATGGGG CTAGTGGAGTCGATTGATGGACTTCAGTACACCAGGATGTCTCTTGTCCCCGAAACGGATTACTCTCCGTTCCCGAATAACTGGAGGCCTGATCACGAGA AGGCGTTGATCGAGTACATAAACCTCGAGGATCCAAAAAGATTGGAGGAGCAGCAGTCTGATATTAGGGGTCAAGGTCTTGTATCCCCTCAGGATTACAT CTCGATGCTTGTGTGGAATTATAAGAGAAATGCACTTGCTATGGATCAGTTTCCGAGTTTATCGAGAGGGATCGGCACGGAAAGAGAGGCGAATGCAAAT CTTCTGTTGTCATCCGGGAACCATGACCAGCAGAGAAGGTCGGAAGATGAAGAGCACGGTGCTAGACCCATTGCCGCCCAAATGTAA
AA sequence Show only first row Show all	>Lus10011050 pacid=23148638 polypeptide=Lus10011050 locus=Lus10011050.g ID=Lus10011050.BGIv1.0 annot-version=v1.0 MHRRLATFVYRHRIPVTTALSPAIISGQLNNRSYVFAIFRLSSFTPSYKRSPDPDDPTNLMREDGVSVCSQMWIENFREPDRTATNLTTYLRRFELWVLG YQKVCADEIGTYVPRSAIQRSALEDLLVLRNAVLDGRFKWGARLDFFIKSPKDKTDYSSLSKRKIKAILTTTQPAAFQDKIVQEVLFMILEPVYESRFSD KSFAFRPGRTAHTVLRVIRRSFAGYLWYLKGDLSTVLDGSMKESFVIGALMRDVRDKNIVDLVKSALSTPVITTGFELPKKKTKRKHQKKRVLAEDEPKP DPYWLDTFFGFAPEEAEKQPKWGHCGILSPLLANICLDELDRWMENKIKEYYTPSKSDVIWNSPEGESEQGNTSWPEFVPTSGPDKTRKMNYVRYGGHFL IGVRGPRSDAATLRKQLIEFVDQKYMMKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLDFLKGD RDPDPQPCFRMFHATQAHTNAQMNKFLSTMVEWFRYADNRKKIVNFCSYILRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGSSPEYHNLLRMG LVESIDGLQYTRMSLVPETDYSPFPNNWRPDHEKALIEYINLEDPKRLEEQQSDIRGQGLVSPQDYISMLVWNYKRNALAMDQFPSLSRGIGTEREANAN LLLSSGNHDQQRRSEDEEHGARPIAAQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46920			Intron maturase, type II famil...		Lus10011050 [exp]	0	1
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	5.0	0.9130
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	7.4	0.9016
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	9.4	0.9095
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	11.5	0.8994
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	18.9	0.9020
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	19.2	0.8952
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	20.5	0.8524
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	25.2	0.8946
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	25.6	0.9018
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	27.3	0.8971

Compare expression of checked genes

Lus10011050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.