Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 340 / 8e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 312 / 7e-105 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 247 / 3e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 207 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G27950 205 / 4e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 181 / 9e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 179 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 179 / 5e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 177 / 3e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 162 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003021 [exp] 565 / 0 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000185 [exp] 446 / 2e-159 AT3G26430 266 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 254 / 1e-81 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 250 / 3e-80 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 227 / 3e-72 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 221 / 4e-69 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 230 / 5e-69 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 201 / 4e-61 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 185 / 5e-55 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047900 [exp] 379 / 1e-130 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 358 / 2e-122 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 290 / 6e-96 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 290 / 1e-95 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 279 / 2e-91 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 265 / 4e-86 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 248 / 2e-79 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 209 / 1e-64 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 202 / 5e-62 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.014G094100 [exp] 194 / 9e-59 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10011051 pacid=23148688 polypeptide=Lus10011051 locus=Lus10011051.g ID=Lus10011051.BGIv1.0 annot-version=v1.0 ATGGTTTCGGAGTGGGAGGTTTTAGGTTGTTCCTTTCAGCTCGAAGCTTACGAACTGGAACTAAGGGCGAGTGAAGTTACCGAGTCAGCTGAAGAGCACA GTAGAAATTGGCCTAAACTGGCCCAAATTCAAAATCTGGGCTATGGGTGTCAACCAGCGGAGGGTTTGGGTTTGCCATATTTGAGTGCATTCCTCGACTC AGTTGGCAGCAACTTCAGCCATGGAGCCAACTCCGCCACGGCCGGTTCTACGGTTCGACCGCCGAATCAAACCCTTCACCAGAGCGGGTTCAGCCCTGTC TCCCTTAACGTCCAGTCTTACCAGTTCCATGACTTCGTCAACCACTCCCAAATCGTCCGAGCCAGAGGAGGAGTGTACTCAAAACTACTACCGAAACCGG AGCATTTCGCCCGAGCGCTCTATACATTCGACATTGGTCAAAACGACCTAACGTCGGCCTACTTCCTCAACATGACCACCGGGCAAGTCGTGGCGCAAAT TCTGGACGTGCTCTCCCAATTCAAGGCGGCGGTCAAGTCGGTCTACTCTCGGGGCGGCAGCTACTTCTGGATCCACGGGACCGGTCCGATACGGTGTTTG GCCTATGTCTTGGACCGGGTCCTGACGACCGAGTTAGACGAGGCCGGGTGCGGGGTGCTGATGAACCGGGTGGCTCAACGGTACAACCGTGGGGTGAAGA GGATGGTTAGAGAATTGGAAGTTGAGTTGCCGTTCGCTGCTATTACTTACGTGGACGTTTACTCTGTGAAGTATGAGCTCATTCGCCATGCAAAATTACA CGGAGGGGATAACGGCGTGCTGCGGCTACGGCGGGAGTACAACTACAGCAGAGAGATCGGGTGCGGAGGGAAGATGACGAAGAAGAACGGTGTAACGGTG GAGGCCAAATCGTGTAAAGATCCGTCCGTCTATGTTAACTGGGACGGCGTCCATTTCACGGAAGTTGGCAACAAGTGGATCTTCGACCAGATCGTGAACG GAAAGTTCTCCGACCCTCCTCTTCCGGTGAACATGGCTTGCCATAGGAAAGAGTAG
AA sequence Show only first row Show all	>Lus10011051 pacid=23148688 polypeptide=Lus10011051 locus=Lus10011051.g ID=Lus10011051.BGIv1.0 annot-version=v1.0 MVSEWEVLGCSFQLEAYELELRASEVTESAEEHSRNWPKLAQIQNLGYGCQPAEGLGLPYLSAFLDSVGSNFSHGANSATAGSTVRPPNQTLHQSGFSPV SLNVQSYQFHDFVNHSQIVRARGGVYSKLLPKPEHFARALYTFDIGQNDLTSAYFLNMTTGQVVAQILDVLSQFKAAVKSVYSRGGSYFWIHGTGPIRCL AYVLDRVLTTELDEAGCGVLMNRVAQRYNRGVKRMVRELEVELPFAAITYVDVYSVKYELIRHAKLHGGDNGVLRLRREYNYSREIGCGGKMTKKNGVTV EAKSCKDPSVYVNWDGVHFTEVGNKWIFDQIVNGKFSDPPLPVNMACHRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	1.0	0.9412
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	3.5	0.9277
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	4.5	0.9134
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	6.3	0.8870
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	7.7	0.9208
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	9.4	0.8992
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	9.6	0.9183
AT5G06270			unknown protein		Lus10004209 [exp]	11.6	0.8897
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	11.7	0.7821
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	18.0	0.9041

Compare expression of checked genes

Lus10011051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.