Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47010 1931 / 0 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT2G03270 207 / 3e-56 DNA-binding protein, putative (.1) AT5G35970 203 / 3e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 195 / 2e-51 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05460 189 / 6e-49 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 185 / 2e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 183 / 1e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 166 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 162 / 5e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 163 / 8e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003024 [exp] 2252 / 0 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10024974 [exp] 213 / 3e-59 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 208 / 2e-56 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10024527 [exp] 211 / 6e-56 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 177 / 1e-45 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 176 / 2e-44 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 168 / 8e-44 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10015030 [exp] 172 / 1e-43 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 172 / 1e-43 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086400 [exp] 2102 / 0 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 2096 / 0 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.013G073900 [exp] 213 / 2e-56 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 206 / 6e-56 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.017G056700 [exp] 196 / 1e-51 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 181 / 2e-46 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 179 / 7e-46 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 178 / 8e-45 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 177 / 2e-44 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 173 / 2e-43 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF09416 [flax] [poplar] UPF1_Zn_bind RNA helicase (UPF2 interacting domain) CL0023 [flax] [poplar] P-loop_NTPase PF04851 [flax] [poplar] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Lus10011054 pacid=23148624 polypeptide=Lus10011054 locus=Lus10011054.g ID=Lus10011054.BGIv1.0 annot-version=v1.0 ATGGGAGGGCTGAATTTCGAGGAGACTGGAGATGACGATGGGTACGAGTTCGGGAAAGGGAATTTCACCGAGCATGCGTGCCGGTATTGTGGCGTGTCTA ACCCTGCCTGCGTTGTGAGGTGTAATGTGCCATCCTGTAGGAAGTGGTTCTGTAATTCCAGAGGGAATACGTCAGGTTCTCATATCGTTAATCATCTGGT GCGAGCAAAGCACAAAGAAGTTTGCCTCCACAAGGACAGTCCTTTGGGGGAAACTATTCTGGAATGCTACAACTGTGGGTGTCGCAACGTATTCCTTCTG GGATTTATATCAGCAAAGACAGAGAGTGTTGTCGTTCTCCTTTGTAGGGAACCATGCTTGAATGTTAATGCGTTAAAGGACATGAATTGGGATCTTAGCC AATGGTGTCCCCTGATTGATGATAGGTGCTTTCTTCAGTGGCTTGTTAAGATCCCTTCTGAGCAAGAACAGTTGCGGGCACGCCAGATTAGTGCACAGCA AATAAATAAGATAGAAGAACTCTGGAAGAGCAACCCTGATGCATCTCTCGAAGATCTTGAGAAACCTGGTGTTGATGATGAACCCCAATCAGTTGCTTTG AAATACGATGATGCGTATCAGTATCAAAATGTATTTGCTCCTCTAATCAAGCTTGAAGCTGACTATGATAAGATGATGAAAGAGTCCCAGAGCAAGGATA ATCTCACGATTCGATGGGATGTAGGACTGAACAAGAAGCGTGTAGCTTATTTTGTTTTTCCGAAGGAGGACAATGAGTTGCGCCTTGTACCCGGTGATGA ATTAAGGCTGCGTTACTCTGGAGATGTGTCTCATCCAGCTTGGCATTCAGTTGGGCACGTGATCAAGTTAACAGCCCAGGAGGAAGTTGCACTTGAGCTT CGTGCTAGTCAGGGTGTTCCTATTGACGTGAATCATGGGTTTAGTGTTGACTTCGTATGGAAGAGCACAAGCTTTGATCGAATGCAAGGTGCAATGAAAA CGTTTGCTGTGGATGAAACAAGTGTTAGCGGGTTCATATACCATCATTTGTTGGGACATGAGGTTGAGAATCACATGGTTCGCAATGCGCTGCCCAGGCG TTTTGGCGCACCTGGACTTCCAGAACTGAATGCATCTCAGGTGTATGCTGTAAAAAATGTCCTCCAACGGCCTGTTAGCTTGATTCAAGGTCCTCCTGGC ACTGGCAAAACTGTCACTTCTGCTGCGATTGTATATCACATGGCCAAACAGGGCCAGGGGCAGGTTTTGGTCTGTGCACCAAGTAATGTGGCTGTTGACC AACTAGCTGAGAAGATAAGTGCAACTGGATTAAAGGTTGTTCGAATTTGTGCAAAGTCGAGGGAAGCTGTAAGCTCTCCTGTTGAGCATCTGACTCTTCA CTATCAGGTTCGACATCTTGATACTTCTGAAAAGAGTGAACTTTACAAGTTGCAACAGCTGAAAGATGAACAAGGTGAGCTTTCTAGCAGTGATGAGAAA AAATACAAGGCCCTGAAGCGTGCTACAGAGAGGGAGATATCTCAAAGTGCTGATGTCATATGCTGCACTTGTGTTGGCGCTGGTGACCCTCGTCTCTCCA ATTTTAGGTTCCGCCAGGTGCTTATTGATGAGTCCACTCAAGCTACTGAACCTGAGTGTCTTATTCCATTGGTTCTTGGGGCAAAGCAGGCAATTCTTGT TGGAGATCATTGCCAACTAGGTCCTGTTATAATGTGCAAAAAAGCAGCTCGAGCTGGACTAGCACAGTCTCTATTTGAACGCCTTGTGTTGCTTGGAGTA AAGCCAATCAGGTTGCAGGTTCAATACCGTATGCATCCAGCTCTCTCAGAGTTCCCATCTAATAGTTTTTATGAGGGGACCCTGCAAAATGGAGTTACTG TAAATGAGAGGCAAACAACTGGCATTGATTTCCCTTGGCCCGTGCCAAACCGTCCTATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCCAG TGGAACCTCCTATCTCAATCGTACGGAGGCTGCGAATGTCGAAAAGATTGTAACTACTTTCTTGAGGAGTGGTGTAGTCCCTAGTCAGATTGGGGTTATT ACTCCTTATGAAGGTCAAAGAGCATATATTGTCAACTATATGGCAAGAAACGGTGCTCTCAGGCAGCAACTTTATAAAGAAATTGAGGTCGCCAGTGTAG ATTCATTTCAAGGCAGGGAAAAGGATTATATAATTCTGTCTTGTGTTAGGAGCAATGAACATCAGGGTATTGGGTTTCTTAATGATCCTAGAAGGCTCAA TGTAGCTCTTACTCGTGCTCGTTACGGAATTGTGATACTGGGCAACCCAAAAGTCCTTAGCAAACAGCCTCTATGGAATGGATTGTTGACACATTACAAG GAACATGAATGTCTTGTCGAAGGCCCTCTAAATAACTTGAAGCAGAGTATGGTTCAGTTTCAAAAACCCAAAAAGATATATAATGACAGAAGACTTTACT TTGGGACTGGTCCTGGAGTATTGCCCAATGATGGTGTGGGAGCTGCTGCCTCAAATGCATCCGGTGCTGACAGAAGAAGCGGTCGTGGCAGGGGTTCACT TGTACCAACTGGTCCTGCAAATGGTGCTCACAGGTCTGGAGTGCACCCTACTGGATATCCAATGCCCCGAGTGCCAATGCCGCAATTCCATGGTGGGCCA CCTCAACCTTACGCGATTCCTTCACGTGGCGCTGTGCATGGACCAGTTGGAGCTGTTCCGCATGTTCCTGCACCTGGAAGTCGGGGTTTCGGGGCTGGCC GTGGAAGCACTACTGCTCCTATTGGTAGTCATCTTCAACACCAGAACAATCAACAGCCAATAGGGAATATTGGACCTAGTTTCAACTTCCCTGGCTTAGA GAATCCAAATAGCCAGCCATCTGTCGGTGGTCCATTGTCTCAACCTGGATTTGTTAATAACATGCCAGCTCAAGGATCAAGCCAAACGTTCCGTGATGGA TTTTCAATGGGTGGAATGTCTCAGGATTTCTTGGGCGACGACTTCAAGAGTCAGGGGTCGCACGTGCCTTACAATGTTGCAGATTTCTCCACTCAGGCTT CCCAAAGTGGATATGCTGTCGATTACGCGACACAAGGAGCTCAAGGTGGGTATCATGGAAACTTCCTGAACCAGAGCTCGCAAGGTGGATATTCTCGATT TGGTTCTGGGAATGACTTCATGACTCAGGACTACATGGGTCATGGCGCACAAGGGCTATTTACACAGGCTGGCTTGAACGATCCTTCTCAAGATGAAGTG TCTCAGAGCCATTTCGGCATGGCAAATCCTACTTCACTCCAGTCTCAGGGCTATATGAACTCTCTCTACTCGCAGCCCTTCGGGCACTACAATACCCAGC AACCGAACTTACAAGGGGGCCCACCACAGCAGACTCAGCAGCAGCAGCCACAGGGCTCCCAGAACCCGAAAATCCACTACAATGGTTGA
AA sequence Show only first row Show all	>Lus10011054 pacid=23148624 polypeptide=Lus10011054 locus=Lus10011054.g ID=Lus10011054.BGIv1.0 annot-version=v1.0 MGGLNFEETGDDDGYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLL GFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKSNPDASLEDLEKPGVDDEPQSVAL KYDDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDVGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDVSHPAWHSVGHVIKLTAQEEVALEL RASQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGFIYHHLLGHEVENHMVRNALPRRFGAPGLPELNASQVYAVKNVLQRPVSLIQGPPG TGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKSELYKLQQLKDEQGELSSSDEK KYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV KPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVI TPYEGQRAYIVNYMARNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYK EHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLYFGTGPGVLPNDGVGAAASNASGADRRSGRGRGSLVPTGPANGAHRSGVHPTGYPMPRVPMPQFHGGP PQPYAIPSRGAVHGPVGAVPHVPAPGSRGFGAGRGSTTAPIGSHLQHQNNQQPIGNIGPSFNFPGLENPNSQPSVGGPLSQPGFVNNMPAQGSSQTFRDG FSMGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYAVDYATQGAQGGYHGNFLNQSSQGGYSRFGSGNDFMTQDYMGHGAQGLFTQAGLNDPSQDEV SQSHFGMANPTSLQSQGYMNSLYSQPFGHYNTQQPNLQGGPPQQTQQQQPQGSQNPKIHYNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	0	1
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	1.0	0.9837
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	1.4	0.9530
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	1.7	0.9507
					Lus10021411 [exp]	2.4	0.9331
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	3.2	0.9155
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	3.5	0.9459
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	6.3	0.9209
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	8.1	0.9339
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	8.5	0.9106
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	8.8	0.9259

Compare expression of checked genes

Lus10011054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.