Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02040 792 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 720 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 678 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 665 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 637 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G32450 446 / 2e-150 NRT1.5 nitrate transporter 1.5 (.1) AT5G46050 444 / 5e-150 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G40460 432 / 2e-145 Major facilitator superfamily protein (.1) AT5G46040 430 / 1e-144 Major facilitator superfamily protein (.1) AT2G26690 416 / 3e-139 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000670 [exp] 1115 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 996 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 962 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 926 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 657 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 650 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 638 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 596 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011786 [exp] 479 / 1e-163 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100200 [exp] 917 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 853 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 662 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 651 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 649 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 642 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 635 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 486 / 5e-166 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G029200 [exp] 482 / 9e-165 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G068100 [exp] 473 / 2e-161 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10011055 pacid=23148663 polypeptide=Lus10011055 locus=Lus10011055.g ID=Lus10011055.BGIv1.0 annot-version=v1.0 ATGGATTCGGTGGAGGAACAGGCGTCGCTGCTCGAACACGGCCCGTCCTCGCACAACAATCAGGGGGAACGAGATGGACAGCACACTGGGGATGGCTCGG TTGACATCAAAGGGAGGCCAGTTATCAAGCAGAACACAGGAAATTGGAGAGCATGTCCTTTCATATTGGGTACGGAGTGTTGTGAACGCTTGGCCTACTA TGGAATCGCGACGAATCTCGTTACTTATCTTACCACAAACATGCATCTGGGAAATATATCTGCTGCAAGGACCGTCACTACTTGGTCTGGCACTTGTTAT ATTACGCCACTCATTGGAGCTATAGTGGCGGATGCTTACTGGGGTAGATATTGGACCATTGCTGCTTTCTCGACGATCTACTTCATTGGAATGTGCACGT TGACGCTTTCAGCAGCAGTTCCAGCACTCAAACCATCGGAATGCGTCGGCTCTCTCTGTCATCCACCAACTCTTCCACAGTACGGTGTATTTTTCTTCGG CCTATATCTAATCGCATTCGGCACAGGCGGCATCAAGCCTTGCGTTTCATCATTCGGGGCAGATCAGTTCGACGATACCGACCCCAGAGAGAGGGTGAAT AAGGGTTCCTTCTTCAATTGGTTTTATTTCTCGATCAACATCGGCGCTCTTATTTCAAGCAGCTTAATCGTGTACATCCAAGATAACGTAGGCTGGGCTG TAGGGTTCGGTGTGCCTGCGTTATTTATGGGCATTGCCATAGCAAGTTTCTTCTCTGGCACGCCACTCTACCGTCTGCAGAAACCAGCGGGCAGCCCTCT TACCAGAATGTGTCAGGTTATGGTTGCATCTTTCCATAAGTGGAACCTGGAGGTCCCTTCTGACAGCAATCTCCTTTATGAAGCGCGAGATGATAGCTCA TCTGTTGAAGGAAGCCGCAAGCTGGAGCACACCGACGAATTGAAATGCCTTGACAGAGCTTCCGTAATATCAGAAACCGAGCTAAAAACCGGGGACTTCG CCAACCAATGGAGACTCTGCACTGTAACACAAGTCGAAGAACTCAAGATCCTAATCCGAATGTTCCCCATCTGGGCCACAGGAATTGTCTTTGCAGCAGT CTACGCTCAAATGTCCACCATGTTCGTCGAGCAAGGCATGCTAATGGACGCCACCGTCGGCTCCTTCAAAATCCCACCGGCATCTCTCTCCACATTCGAC GTGGTCAGCGTCATCTTCTGGGTACCAGTGTACGACGCTCTGATCGTCCCACTCGCCAGAAAGTTCACAGGCAACCCGAGAGGCTTCTCGGAGCTCCAAC GTATGGGGATCGGGTTACTAATCTCCATCCTCGCCATGGCAGCAGCTGCCCTCGTCGAGATCAATCGCCTCCAGCACAAATCGGACCCGCCTAGCATCTT CTGGCAGATCCCGCAGTACATGCTGGTCGGTGCTGCAGAGGTGTTCACCTTCATTGGCCAGCTCGAGTTCTTCTACGAGCAGTCTCCGGATGCCATGAGG AGTCTGTGTAGCGCTCTGGCCCTTCTCACGACTTCGTTGGGTAACTATTTGAGCTCGTTTATACTGACGATGGTCGCGTATTTCACGACAAAGGGGGGAG AGCTGCCCGGGTGGATTCCGGATGACTTGAATGAAGGGCATCTTGATTACTTCTTCTGGTTGCTGGCTGGGTTGAGCTTTGTTAATATGTTGGTTTATGT TGCTTGTGCTGTAAGGTATCGCCAAAAGAAAGCTGTCTAA
AA sequence Show only first row Show all	>Lus10011055 pacid=23148663 polypeptide=Lus10011055 locus=Lus10011055.g ID=Lus10011055.BGIv1.0 annot-version=v1.0 MDSVEEQASLLEHGPSSHNNQGERDGQHTGDGSVDIKGRPVIKQNTGNWRACPFILGTECCERLAYYGIATNLVTYLTTNMHLGNISAARTVTTWSGTCY ITPLIGAIVADAYWGRYWTIAAFSTIYFIGMCTLTLSAAVPALKPSECVGSLCHPPTLPQYGVFFFGLYLIAFGTGGIKPCVSSFGADQFDDTDPRERVN KGSFFNWFYFSINIGALISSSLIVYIQDNVGWAVGFGVPALFMGIAIASFFSGTPLYRLQKPAGSPLTRMCQVMVASFHKWNLEVPSDSNLLYEARDDSS SVEGSRKLEHTDELKCLDRASVISETELKTGDFANQWRLCTVTQVEELKILIRMFPIWATGIVFAAVYAQMSTMFVEQGMLMDATVGSFKIPPASLSTFD VVSVIFWVPVYDALIVPLARKFTGNPRGFSELQRMGIGLLISILAMAAAALVEINRLQHKSDPPSIFWQIPQYMLVGAAEVFTFIGQLEFFYEQSPDAMR SLCSALALLTTSLGNYLSSFILTMVAYFTTKGGELPGWIPDDLNEGHLDYFFWLLAGLSFVNMLVYVACAVRYRQKKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	3.0	0.9135
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	3.0	0.9040
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	8.0	0.8875
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	10.0	0.8950
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	11.7	0.9085
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	13.7	0.8965
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	17.2	0.8666
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	19.6	0.8941
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	20.5	0.8938
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	20.8	0.8792

Compare expression of checked genes

Lus10011055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.