Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59960 324 / 9e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 301 / 1e-101 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37790 248 / 6e-81 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 238 / 6e-77 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37760 234 / 1e-75 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G62420 233 / 3e-75 NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 228 / 4e-73 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 221 / 2e-70 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 184 / 7e-56 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 179 / 3e-54 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030946 [exp] 476 / 1e-170 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010720 [exp] 332 / 1e-113 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 328 / 3e-112 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 254 / 3e-83 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10000671 [exp] 247 / 1e-82 AT1G59960 112 / 2e-30 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 250 / 1e-81 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031162 [exp] 250 / 1e-81 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010885 [exp] 235 / 8e-76 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 228 / 5e-73 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193100 [exp] 343 / 4e-118 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 332 / 1e-113 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.012G039901 [exp] 246 / 3e-82 AT1G59960 201 / 1e-64 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G125400 [exp] 245 / 1e-79 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.016G102032 [exp] 234 / 3e-75 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 223 / 3e-71 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 223 / 5e-71 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 215 / 4e-68 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 212 / 7e-67 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G144600 [exp] 173 / 4e-51 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10011056 pacid=23148700 polypeptide=Lus10011056 locus=Lus10011056.g ID=Lus10011056.BGIv1.0 annot-version=v1.0 ATGGACATCAAAGTTCCTGGTGGCGGTGTCCGGAAGATGCCGGCGGTCGGCATGGGAACCTCCGCCCACCCTTTACCGACGGAAGAAGTCATGGTCGCCA CCTTCCTCGACGCCATCGAGGTGGGTTACCGCCACTTCGACACGGCGGCGCTCTACGGCTCCGAGGAAAGCGTGGGGAGAGCGGTGGCGGAAGCTGCGGA TAAGGGACTCGTCGAGAGTCGTGACGAGTTCTTCATCACGTCCAAGGCTTGGTGTACTGATCTTTATCCGGAACTCGTCGTCCCGGCACTTAAAAACAGT CTACGGAGGCTTGGGATGGAGTATGTTGATCTATACCTAGTACACTTCCCGGTAACGCTGAAGAACGATGCCAAGCCATTGGAGTTTGCCAAAGACGAGA TCGTGGAGTTCGACATGAAGGGAGTATGGAATGCAATGGAAGAGTGTTACAAACAAGGCCTATGTAAAGCCATTGGTGTTAGCAACTTCGGTCCTGCAAA GCTCTGTCAACTACTCGACTACGCAACCATCCCTCCTTCGGTTAACCAGGTTGAGATGAACGTGGGATGGCAACAAAAGGAACTGGTGGAGCTATGCAAA CAAAAAGGAATTAGAGTTTGTGCATGGTCTCCACTTGCAGCCAATGGCGCTAATTGGGGCTCTTTCGCTGTTATGAAGAACCCCGTACTTCAGGAAATCG CCGAAGCTAAGGGGAAGTCGATCTCACAGGTAGCATTGAGGTGGATATACGAGCAAGGAGTGATTCCGATAGTGAAGAGCTTCAACAAGGAAAGAATGAG GCAAAACCTCGATATATTCAGCTGGCAACTAACAGAAAATGAAACTCTGAGGATCAAGCAGATTCCACAAAATCGAGGGTGGTCCGGGGAGTTGTTCGTC TCCGAGACCGGTCCTTACAAGTCCACCGATGACCTCTGGAACCAACCCTTTCGAAACCTCTAG
AA sequence Show only first row Show all	>Lus10011056 pacid=23148700 polypeptide=Lus10011056 locus=Lus10011056.g ID=Lus10011056.BGIv1.0 annot-version=v1.0 MDIKVPGGGVRKMPAVGMGTSAHPLPTEEVMVATFLDAIEVGYRHFDTAALYGSEESVGRAVAEAADKGLVESRDEFFITSKAWCTDLYPELVVPALKNS LRRLGMEYVDLYLVHFPVTLKNDAKPLEFAKDEIVEFDMKGVWNAMEECYKQGLCKAIGVSNFGPAKLCQLLDYATIPPSVNQVEMNVGWQQKELVELCK QKGIRVCAWSPLAANGANWGSFAVMKNPVLQEIAEAKGKSISQVALRWIYEQGVIPIVKSFNKERMRQNLDIFSWQLTENETLRIKQIPQNRGWSGELFV SETGPYKSTDDLWNQPFRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10011056 [exp]	0	1
					Lus10000300 [exp]	2.6	0.9357
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	10.5	0.9456
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Lus10035671 [exp]	12.1	0.9396
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	14.0	0.9377
					Lus10006005 [exp]	14.2	0.8826
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10015554 [exp]	15.3	0.8791
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	16.2	0.9435
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	22.9	0.8950
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	23.5	0.9382
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	23.9	0.8714

Compare expression of checked genes

Lus10011056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.