Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32440 827 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT5G52920 773 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT3G22960 375 / 2e-122 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G63680 292 / 1e-91 Pyruvate kinase family protein (.1) AT5G08570 290 / 1e-90 Pyruvate kinase family protein (.1) AT5G56350 278 / 2e-86 Pyruvate kinase family protein (.1) AT3G25960 275 / 3e-85 Pyruvate kinase family protein (.1) AT3G04050 274 / 1e-84 Pyruvate kinase family protein (.1) AT3G55650 273 / 2e-84 Pyruvate kinase family protein (.1) AT4G26390 270 / 2e-83 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000672 [exp] 1160 / 0 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 745 / 0 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10039396 [exp] 380 / 2e-124 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 375 / 7e-123 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 330 / 2e-105 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 313 / 2e-98 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10017364 [exp] 292 / 1e-91 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 287 / 2e-89 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 280 / 6e-87 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145300 [exp] 895 / 0 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 879 / 0 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 800 / 0 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G080700 [exp] 379 / 4e-124 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 379 / 5e-124 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 332 / 3e-106 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 326 / 1e-103 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 286 / 2e-89 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 285 / 7e-89 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 279 / 1e-86 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10011057 pacid=23148619 polypeptide=Lus10011057 locus=Lus10011057.g ID=Lus10011057.BGIv1.0 annot-version=v1.0 ATGGATGAGACAGCGACGGCCGGAATCAAGATTTGCCTAAATTCTCCACCCTCTGTTTCAAAGATCAATAAACGTCATACGGCTGACATTATTACAATTC GAGGGAAAATCTGGTCAATGAGCCGTCTAACTATAGTCGCCCATCACCTTCTTCATCTTCGGGCTGTCCAAATGATCTCCAATAGGCTGTCCGCGGCGGG GGCGGGGGCGGATCATTCGCGGCTGTTATCGAAGAGCTTCGTCGGATGCGACCAATCCGCGAGGAGATTTGCATCTCCCCGGTCTGGATTTAAGCTCTCC GTGTCGATGAAGCTCTCCGCCGAGTCGTCTCCTGAGGTTACTCCGGTTACGGCTAACGGCCCTGTATCTGCTGACAAGGAGTATGTGGCTCCGGACAGTG TAGCGGTCAACAATATTATGGGGTATGAGAAGACGAGACCGATTGCTCTAAGGAAAACGAAGATAGTTTGTACAATTGGTCCATCAACGAGCTCGCGAGA AATGATATGGAAGCTTGCAGAAGCTGGGATGAATGTTGCTCGTTTGAACATGTCTCATGGAGACCATGCCTCTCACCAGAAGACTATTGACTTGGTTAAG GAGTATAATGCACAGTTTGAAGACAAGGTTATTGCAATTATGCTGGACACCAAGGGCCCGGAGGTTAGAAGTGGAGACGTGCCTCAACCAATCTATCTCC AGGAGGGGCAGGAATTTAATTTCACAATCAAAAGAGGAGTCTCAACAGAAGACACTGTGAGTGTGAATTATGATGACTTCATCAATGATGTTGAGGCGGG AGATGAATTGCTTGTGGATGGTGGAATGATGTCCTTGGTTGTGAAGTCAAAGACAACTGAGACAGTTAAATGTGAAGTAGTTGATGGTGGTGAACTAAAA TCACGACGGCATTTGAATGTTCGTGGTAAAAGTGCAACTCTTCCTTCTATCACAGACAAGGACTGGGAAGATATCAAATTTGGAGTGGACAACCAAGTTG ATTTTTATGCTGTCTCGTTTGTTAAAGATGCTAACGTGATCCATGAGTTGAAAGCTTACCTCAAGAGCTGCAATGCAGACATTCATGTTATCCCCAAAAT CGAAAGTGCTGACTCCATCCCAAATCTTCACTCAATACTGTCTGCTTCAGATGGGGCTATGGTTGCTCGTGGAGACCTTGGCGCTGAACTTCCAATTGAA GAAGTTCCTTTGTTGCAGAATGACATCATCAGAAGGTGTCACAGCATGCAGAAGCCAGTTATCGTGGCAACAAACATGCTTGAGAGCATGATCAATCATC CTACTCCAACAAGGGCTGAGGTGTCTGATATTGCAATTGCTGTTCGTGAAGGAGCTGATGCAGTCATGCTTTCTGGAGAAACTGCTCATGGAAAATTCCC TTTGAAAGCTGTTAAAGTAATGCATACCGTGGCGTTGAGGACAGAGGCAAGTTTACCTGCTAACACCGCTCCTCCGACTGGTGCACACAAGAGCCATATG GGTGATATGTTTGCCTTCCATGCTACAATCATGGCAAACACTCTCAACACACCGATCATCGTCTTCACAAAAACTGGATCAATGGCAGTGCTTTTGAGTC ATTATCGCCCTTCCTCCACCATCTTTGCCTTCACAGATGATGAAAGGATAAAGCAGAGGCTGGTGCTATACCAGGGAGTCATGCCGATTTACATGAACTT CACTAACGATGCAGAAGAGACCTTCTCCCGAGCGGTCAAGCTCTTAGTGAACAAGGGTCTGTTGGTAGAAGGACAACACGTCACTCTTGTCCAGAGCGGA GCTCAACCAATCTGGCGTATCGAGTCTACTCACCACATCCAAGTTCGGAAGGTTCAAAGTTGA
AA sequence Show only first row Show all	>Lus10011057 pacid=23148619 polypeptide=Lus10011057 locus=Lus10011057.g ID=Lus10011057.BGIv1.0 annot-version=v1.0 MDETATAGIKICLNSPPSVSKINKRHTADIITIRGKIWSMSRLTIVAHHLLHLRAVQMISNRLSAAGAGADHSRLLSKSFVGCDQSARRFASPRSGFKLS VSMKLSAESSPEVTPVTANGPVSADKEYVAPDSVAVNNIMGYEKTRPIALRKTKIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHASHQKTIDLVK EYNAQFEDKVIAIMLDTKGPEVRSGDVPQPIYLQEGQEFNFTIKRGVSTEDTVSVNYDDFINDVEAGDELLVDGGMMSLVVKSKTTETVKCEVVDGGELK SRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDANVIHELKAYLKSCNADIHVIPKIESADSIPNLHSILSASDGAMVARGDLGAELPIE EVPLLQNDIIRRCHSMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEASLPANTAPPTGAHKSHM GDMFAFHATIMANTLNTPIIVFTKTGSMAVLLSHYRPSSTIFAFTDDERIKQRLVLYQGVMPIYMNFTNDAEETFSRAVKLLVNKGLLVEGQHVTLVQSG AQPIWRIESTHHIQVRKVQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	0	1
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	1.4	0.9644
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	2.4	0.9541
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	4.0	0.9538
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	4.5	0.9558
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	5.5	0.9480
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	5.7	0.9359
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	6.5	0.9467
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	6.9	0.9386
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10006644 [exp]	8.4	0.9023
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	9.5	0.9416

Compare expression of checked genes

Lus10011057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.