Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 803 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 719 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 592 / 0 Major facilitator superfamily protein (.1) AT3G54140 437 / 8e-147 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 426 / 2e-142 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 411 / 9e-137 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 402 / 3e-133 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 363 / 9e-119 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 327 / 3e-104 Major facilitator superfamily protein (.1) AT5G46050 320 / 1e-101 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000673 [exp] 1030 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 881 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 878 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 575 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 572 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 464 / 8e-157 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 441 / 3e-148 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 441 / 6e-148 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 434 / 1e-145 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 874 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 870 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 784 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 615 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 613 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 443 / 5e-149 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 426 / 9e-143 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 419 / 7e-140 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 418 / 1e-139 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 416 / 6e-139 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10011058 pacid=23148661 polypeptide=Lus10011058 locus=Lus10011058.g ID=Lus10011058.BGIv1.0 annot-version=v1.0 ATGGCTAGTTGCATGAGGGTCCTTTGCAATAGCAACCAGGAGAAAAAGGTTGTGGAAATGAAGAAGGAAGGAGAGTACTATAATGATGATACAACTACGA CTACAATGGACGGAACAGTCGATTGGAAAGGGAAGCCAGCAATTCGATCGAGATCGGGGCAATGGACCGCCGGAATCATCATTCTTCTGAACCAAGGTCT AGCAACCCTAGCATTCTTTGGAGTTGGAGTGAACTTGGTGCTCTTCTTAACCAGAGTTCTACAGCAAGACAATGCAGAAGCAGCCAACAATGTCAGCAAA TGGACTGGAACTGTCTATATCTTCTCCCTAGTTGGTGCCTTCCTCAGTGACTCCTACTGGGGTAGATACAAGACTTGCGCCATCTTCCAAGGCATCTTCG TCCTGGGTTTGGTGCTACTCTCACTATCATCATACCTCTTCTTGATCAGACCAAAAGGCTGCGGAGACACACTAACACCATGCGGCACGCACACCAATGT CGAAGTCGCTCTGTTCTACCTCTCGATCTACCTAGTCGCGCTAGGGAACGGAGGGTACCAACCGAACATCGCCACGTTCGGAGCAGACCAGTTCGACGAG GAGGATGCTGTTGAAGGGCACTCGAAAGTCGCCTTCTTTAGCTACTTCTACTTGGCTCTAAACCTCGGTTCTCTCTTTTCCAACACTATACTGGGTTATT TCGAGGACGAAGGGATGTGGGCGCTCGGGTTCTGGGCGTCGGCTGGCTCAGCATTCGCGGGATTGGTCTTGTTTCTCGCGGGATCGAGCAGGTATCGTCA CTTTAAGCCCACGGGGAACCCCCTGGCACGACTGTGCCAGGTGGTTGTTGCGTCGGTGAAGAAATGTAGGCTAAAGTCGGAGGAGAAAGCGGATGAATTG TTCGACATCGATTCAAAAGACTGCTCCGGAAGTGGGAATAGGAAGATCATGCATACTGATGGATTCAAGTTTCTTGACAGAGCAGCATGCATTACAACAA GGGACAAGGACGATCAGAAGAACGGGTTTCGAAACCCGTGGCGTTTATGCCCCGTTACGCAGGTCGAGGAAGTGAAATGCATACTTCGACTCCTCCCGAT ATGGCTCTGCACCATACTCTACTCGGTCGTGTTCACCCAGATGGCCTCGCTCTTCGTCGAGCAAGGCGCTGCGATGAAAACCACGATATCAGGATTCCGA ATCCCACCAGCTAGCATGTCGAGCTTCGACATCCTAAGTGTGGCGCTCTTCATCTTCCTCTACCGGCGAGTCCTTGACCCATTGGTCGGTCATATCAAGA AATCTAGCACGAAAGGTTTCACAGAGCTCCAGAGGATGGGGATCGGACTAGTTATCGCAGTAATGGCAATGGTCTCCGCAGGGATTGTGGAGAGTTACAG ACTAAGGCATGCCGACAAAGAATGCTCGAGTTGCGAGGGTTCGAGCTCGTTGAGCATAATGTGGCAGATACCGCAATACGCGCTGATAGGAGCCTCCGAG GTGTTCATGTACGTGGGCCAGCTAGAGTTCTTCAACGCACAGGCCCCCGACGGGTTGAAGAGCTTCGGGTCAGCGCTATGCATGACCTCAATCTCGTTGG GAAATTACGTGAGTAGCCTTCTGGTGACGATGGTGATGAAGATCTCGACGCAGGATCGGATGCCAGGGTGGATCCCGGGGAATCTGAACAAAGGTCACCT GGACAGATTCTACTTCTTGCTGGCTGCGTTGACTTCGCTTGACTTGCTTTTGTATGTGGCTTGTGCTAAGTGGTACAAGGGGATCGAGCATGAACGGAAA TGCGACGATAACTCAGACGAAGAGAGCGAGGGAGACGAGAAATGTGAAGTCTAG
AA sequence Show only first row Show all	>Lus10011058 pacid=23148661 polypeptide=Lus10011058 locus=Lus10011058.g ID=Lus10011058.BGIv1.0 annot-version=v1.0 MASCMRVLCNSNQEKKVVEMKKEGEYYNDDTTTTTMDGTVDWKGKPAIRSRSGQWTAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQDNAEAANNVSK WTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVLGLVLLSLSSYLFLIRPKGCGDTLTPCGTHTNVEVALFYLSIYLVALGNGGYQPNIATFGADQFDE EDAVEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSAFAGLVLFLAGSSRYRHFKPTGNPLARLCQVVVASVKKCRLKSEEKADEL FDIDSKDCSGSGNRKIMHTDGFKFLDRAACITTRDKDDQKNGFRNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTISGFR IPPASMSSFDILSVALFIFLYRRVLDPLVGHIKKSSTKGFTELQRMGIGLVIAVMAMVSAGIVESYRLRHADKECSSCEGSSSLSIMWQIPQYALIGASE VFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTQDRMPGWIPGNLNKGHLDRFYFLLAALTSLDLLLYVACAKWYKGIEHERK CDDNSDEESEGDEKCEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	0	1
AT2G28780			unknown protein		Lus10024409 [exp]	1.0	0.9728
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	1.4	0.9497
AT3G09450			unknown protein		Lus10025334 [exp]	2.4	0.9303
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	2.8	0.9273
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10020700 [exp]	3.2	0.8896
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	4.1	0.8827
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	4.6	0.9002
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	4.9	0.8993
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	6.0	0.9075
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	7.2	0.8861

Compare expression of checked genes

Lus10011058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.