Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040104 [exp] 39 / 0.0001 ND 36 / 5e-04 Lus10030943 [exp] 37 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011059 pacid=23148698 polypeptide=Lus10011059 locus=Lus10011059.g ID=Lus10011059.BGIv1.0 annot-version=v1.0 ATGGATATAGTAGTACCACAAAGCAAACAGGTTTTATCTCCTGAGGAGGCCACACGTGAGGCACTCATCGCCATCTCGAATTCAGACAATGCTGCTTCCG AGACCTTGATCAGCTACAAAGATGGATCTGGAAAAGGTGTGAATAACCGCAGTGGGAAAGAGAAGTACATGATTTCAGAGAATTATATAGATGCAGAAGC ACCATGGCGCAATGTAGTTTCGTGTTCTAGGGAAGCAACACGGGAGGCACTCATCGCGATATCATATTTGGTACCAGACAATGGTGGTGTTGAGACATTG AGCTACAAAGATGTAGGAGGAAGAGCGGTGGCTGCAAGAGGCGGAATTGAGAGGTATATGGACGAACTGATCTCGATTTCAGACAGCCAGTCGCCTGATT CCGTGTCTTATCCAGTTGTTGTGGATTCTGGGAACCACAAGAGTTACTGA
AA sequence Show only first row Show all	>Lus10011059 pacid=23148698 polypeptide=Lus10011059 locus=Lus10011059.g ID=Lus10011059.BGIv1.0 annot-version=v1.0 MDIVVPQSKQVLSPEEATREALIAISNSDNAASETLISYKDGSGKGVNNRSGKEKYMISENYIDAEAPWRNVVSCSREATREALIAISYLVPDNGGVETL SYKDVGGRAVAARGGIERYMDELISISDSQSPDSVSYPVVVDSGNHKSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011059 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	3.5	0.9279
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	3.7	0.9340
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	5.7	0.9178
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	7.0	0.9159
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	9.5	0.9105
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	11.1	0.9199
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10028531 [exp]	14.1	0.9125
AT5G32440			Ubiquitin system component Cue...		Lus10027700 [exp]	17.4	0.8937
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	19.9	0.8816
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	22.2	0.9024

Compare expression of checked genes

Lus10011059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.