Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32060 609 / 0 PRK phosphoribulokinase (.1) AT3G27440 79 / 3e-16 UKL5 uridine kinase-like 5 (.1) AT1G55810 72 / 8e-14 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 71 / 2e-13 UKL4 uridine kinase-like 4 (.1.2) AT3G27190 69 / 1e-12 UKL2 uridine kinase-like 2 (.1) AT5G40870 68 / 2e-12 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G26190 54 / 7e-08 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 53 / 2e-07 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000674 [exp] 650 / 0 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10030949 [exp] 591 / 0 AT1G32060 633 / 0.0 phosphoribulokinase (.1) Lus10021310 [exp] 80 / 2e-16 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 79 / 3e-16 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10016989 [exp] 78 / 1e-15 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10035216 [exp] 77 / 2e-15 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 73 / 4e-14 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041569 [exp] 73 / 4e-14 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10030919 [exp] 55 / 4e-08 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134000 [exp] 622 / 0 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.003G099400 [exp] 614 / 0 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.017G071200 [exp] 87 / 7e-19 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.017G069600 [exp] 77 / 3e-15 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 76 / 4e-15 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.001G332100 [exp] 75 / 1e-14 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.011G165100 [exp] 75 / 1e-14 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.008G110500 [exp] 56 / 2e-08 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 54 / 1e-07 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 52 / 5e-07 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10011060 pacid=23148680 polypeptide=Lus10011060 locus=Lus10011060.g ID=Lus10011060.BGIv1.0 annot-version=v1.0 ATGAGGCGGCTCACCAGCGTCTTCGGAGGCGCGGCCGAGCCGCCCAAGGGGGGCAACCCGGACTCCAACACGCTCATTAGCGACACCACGACCGTCATTT GCCTTGACGACTACCACTCCCTCGACAGGACCGGGAGGAAGGAGAAGGGTGTGACGGCGCTTGACCCTAAGGCAAATGACTTTGACCTCATGTTTGACCA GGTCAAGAAGCTGAAAGACGGCGTGGCGGTTGATAAACCGATTTATAACCATGTTTCCGGGTTGCTCGACCCGGCTGAGGTTATCCAGCCGCCCAAGATC CTCGTCATTGAAGGTCTCCACCCAATGTACGACGAACGGGTGAGAAAGCTACTCGACTTTAGTATCTATTTGGACATCAGCAATGAGGTCAAATTCGCTT GGAAAATCCAGAGAGACATGGCAGAGAGAGGGCATAGCTTGGAGAGCATCAAGGCGAGTATCGAGGCTCGCAAGCCCGATTTCGATGCCTACATTGACCC GCAGAAGCAGTACGCTGACGCGGTCATCGAGGTGCTGCCCACGAAACTGATCCCCGACGACAATGGAGGGAAAGTGTTGAGGGTTAGGTTGATCATGAAG GAAGGTGTCAAGTTCTTCAACCCGGTTTACTTGTTTGATGAAGGATCCACCATTGATTGGATCCCATGTGGTAGGAAGCTCACTTGCTCGTACCCCGGCA TCAAGTTTACATATGGCCCCGACACCTATTTCGGCCAAGAGGTGTCGGTACTGGAGATGGACGGGCAATTCGACAGGCTAGACGAGCTGATCTACGTCGA GAGCCACCTGAGCAACCTCTCGACCAAGTTCTACGGGGAAGTGACGCAACAGATGTTGAAGCATGCTGACTTCCCAGGAAGTAACAACGGGACGGGGCTC TTCCAGACGATCGTGGGGTTGAAAATCCGGGATCTCTACGAGCAACTCATTGCAGCCAAGGCCAAGACTCCGGCACAGGCCAAAGCCTAA
AA sequence Show only first row Show all	>Lus10011060 pacid=23148680 polypeptide=Lus10011060 locus=Lus10011060.g ID=Lus10011060.BGIv1.0 annot-version=v1.0 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMFDQVKKLKDGVAVDKPIYNHVSGLLDPAEVIQPPKI LVIEGLHPMYDERVRKLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTKLIPDDNGGKVLRVRLIMK EGVKFFNPVYLFDEGSTIDWIPCGRKLTCSYPGIKFTYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGL FQTIVGLKIRDLYEQLIAAKAKTPAQAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	0	1
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	1.0	0.9922
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	1.4	0.9627
AT4G24700			unknown protein		Lus10041942 [exp]	3.3	0.9492
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10035545 [exp]	3.5	0.9621
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	3.7	0.9457
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	5.3	0.9609
AT1G74730			Protein of unknown function (D...		Lus10004269 [exp]	5.3	0.9530
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	6.3	0.9497
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	6.7	0.9434
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	6.9	0.9568

Compare expression of checked genes

Lus10011060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.