Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32200 547 / 0 ACT1, ATS1 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000675 [exp] 895 / 0 AT1G32200 547 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136600 [exp] 607 / 0 AT1G32200 587 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10011062 pacid=23148671 polypeptide=Lus10011062 locus=Lus10011062.g ID=Lus10011062.BGIv1.0 annot-version=v1.0 ATGATATTCTCCACTTCAGCTCCTCCTTCGACATTCCTCTCAACCGCCGCCGCAACAGCGCCGCCTCTGTCGTCGTTCTTCAGCATCTCCTCCTCTCTTC CGGCGCGCTTCATTTCTCATGCTCCTCCTCCTTCGTTCCGTCTTGGGAGATCTTCTCATCCGCGGAGACTCGTTTTCGCTTCTCAGAATGTGAACGCCAT GCCCGAGCTCGTTAGCAGCAGCGACAAGAATCGAGCTCTTGCTGAACAGGAGGATCGGAGCGAAGGTCAGTTGGCCCGCCGGTCGAGCACGTTTCTCGAT GCTAAGACTGAAGAAGATATCTTGTCTGGAATCAGGATGGAGGCAGAGGCAGGAAGGCTGCCTTCTGTTGTTGCAGCAGGGATGGAAGAACTGTACCACA ATTACAAAAATGCTGTTCTTCAAAGCGAGCGTCCAGATGCAGCTGAGATTGTACTGTCCAACATGTCTATGGTGTTGGACCGAGTTTTCGTCGATGTGGA GGATCCTTTTCTCTTTTCACCTTATCACAAAGCACTGAGGGAGCCATTTGACTACTATGAATTTGGCCAAAAGTATATCCGTCCCTTAATTGATTTTAGA AACTCGTATGTTGGAAACGTGAGCATTTTCAGTGAAATTGAAGAAAAGCTTCAGCAGGGTCATAATGTAATCTTGATGTCAAATCACCAGACCGAAGCAG ATCCAGCAGTCATTGCTTTACTCCTTGAAACAACAAATCGTCATATGGCTGAGAACTTGATCTATGTAGCAGGGGATAGGGTGGTAACAGACCCTCTTTG CAAGCCTTTCAGCATGGGAAGGAATCTCTTCTGTGTCTACTCGAAAAAGCACATGCTTGATGTCCCGGAGCTTGTTGAGATGAAGAAAAAGGCAAATATA AGGAGTTTGAAGGAAATGGCCACGCTTCTAAGGAATGGGTCACAGATAGTATGGATTGCGCCAAGTGGCGGTAGGGATCGTCCTGATCCTGTGACTGGAG AATGGCATCCAGCACGGTTTGACACATCGGCAGTTGACAATATGAGAAGGCTAGCTGAGAATTCCGGTGCTCCAGGACACATCTATCCGCTAGCACTGTT GTGCTCTGATATCATGCCGCCTCCTCCCAAGGTGGAGAAAGAAATCGGAGAGAAACGGGTGATTGCCTATTCTGGAACTGGCTTATCAGTTGGGAAAGAA ATCAAGTTCCACGACTTTGCTAGTACCTATGAGAATCCTGGACAGGCCAAGGAGGCATACGCAAAGGCCCTATACAACTCCATTTCGGACCAGTACGACG TGCTCAAATCTGCTATACGCGGGAAGCAAGTAGCGGATGGATCATCCCCAACAGTCTCTTTGTCCCAACCATGGAAAGCTTGGAACACCCGGATCGAAAA CTCTAGGAAAAGGCAGGACACAATCGAGCATCAAGTTCCCTCTCTGGCGATACCAAGTTTCGCCACAGCACAAATTCTTAAACTGTTTCCGTGGCTCTCT GCTGTGTACAGGAAAACAGCTGGAGCACCTCAGTAG
AA sequence Show only first row Show all	>Lus10011062 pacid=23148671 polypeptide=Lus10011062 locus=Lus10011062.g ID=Lus10011062.BGIv1.0 annot-version=v1.0 MIFSTSAPPSTFLSTAAATAPPLSSFFSISSSLPARFISHAPPPSFRLGRSSHPRRLVFASQNVNAMPELVSSSDKNRALAEQEDRSEGQLARRSSTFLD AKTEEDILSGIRMEAEAGRLPSVVAAGMEELYHNYKNAVLQSERPDAAEIVLSNMSMVLDRVFVDVEDPFLFSPYHKALREPFDYYEFGQKYIRPLIDFR NSYVGNVSIFSEIEEKLQQGHNVILMSNHQTEADPAVIALLLETTNRHMAENLIYVAGDRVVTDPLCKPFSMGRNLFCVYSKKHMLDVPELVEMKKKANI RSLKEMATLLRNGSQIVWIAPSGGRDRPDPVTGEWHPARFDTSAVDNMRRLAENSGAPGHIYPLALLCSDIMPPPPKVEKEIGEKRVIAYSGTGLSVGKE IKFHDFASTYENPGQAKEAYAKALYNSISDQYDVLKSAIRGKQVADGSSPTVSLSQPWKAWNTRIENSRKRQDTIEHQVPSLAIPSFATAQILKLFPWLS AVYRKTAGAPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	0	1
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	3.3	0.7913
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	4.5	0.7757
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	26.5	0.7443
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012789 [exp]	26.7	0.7410
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	27.9	0.7083
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	29.2	0.6786
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	34.1	0.7037
					Lus10040651 [exp]	35.3	0.6710
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	43.8	0.7203
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	45.1	0.6783

Compare expression of checked genes

Lus10011062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.