Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17720 317 / 4e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 308 / 6e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 259 / 4e-86 BPA1 binding partner of acd11 1 (.1.2.3) AT1G67950 226 / 5e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 196 / 3e-61 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 140 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 112 / 3e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G09880 45 / 5e-05 Splicing factor, CC1-like (.1) AT2G16940 44 / 8e-05 Splicing factor, CC1-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000676 [exp] 468 / 1e-167 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 387 / 7e-136 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 382 / 9e-134 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 257 / 6e-85 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 193 / 3e-60 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 171 / 9e-51 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 173 / 2e-50 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 152 / 3e-44 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 151 / 5e-44 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 339 / 4e-117 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 318 / 5e-109 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 256 / 3e-84 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.013G055100 [exp] 185 / 6e-57 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 182 / 8e-56 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 150 / 2e-43 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 144 / 1e-41 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 48 / 6e-06 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.009G137200 [exp] 47 / 1e-05 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 47 / 1e-05 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011063 pacid=23148650 polypeptide=Lus10011063 locus=Lus10011063.g ID=Lus10011063.BGIv1.0 annot-version=v1.0 ATGGCGAAAGTGAAAGATGGAACTGGAGCTATTGATCGTGCCGTCAATGTAGCTGCTGCTGAGGTCGAATCACAGGTAAACACAATCAAAGTGAGTAATG TTTCTCTAAAGGCAGCCGATCAGGACCTCAAGGAGTTCTTCTCCTTCTCTGGTGATATCCAATACGTCGAGATGCAAAGCGACGACGACAACGACAACAA ATCTCAGGTGGGGTACGTTACCTTCAAAGATTACCAAGGTGCAGAAACTGCAATTCTTCTTTCGGGAGCAACTATAGTTGATCTTGCTGTCACCATAACC TTGGATCCATACTACAAGCTCCCACAATCTGTCCTAGCCGCAATGGAGAATGAGACCAAGGACCCAGCAGACCCAGACTCAGCGCTGCGAAAGGCAGAGG ATGTGGTGAGCAGCATGCTGGCAAAGGGATACATACTGGGGAAAGATGCAGTGAATAAGGCCAAGTCATTCGACGAGAAGCACCAGCTAACATCGACAGG GCTGGCTAAGGTGGCATCGTTCGACAAGAAGATAGGACTGACGGACAAGATCAGCGCCAGCACGACAGTGATGGGGGACAAAGTCCGGGAAGTGGACCAG AAGTACCAGGTTACCGAGAAGACCAAGTCGGCATTGGCTGTTGCAGAGCAGACAGTGAGCACTGCGGGGTCTAAGATAATGAAGAACCGGTACGTGTTCA CCAGCGCTGCCTGGGTGACCGGAGCCTTCAGCAGGGTGGCCAAGGCTGCTGAGGACGTCGGGCAGAAGGCCAAAGAGAAGGCCGCCGAAGGAGAGGAGAG AAAGGAAGTTGTGGATGATGATCGTAGTGATAAGCAGAAGGAAGAGAAGAAGGAGGAACAGAAAGAGAAGCTGGGAGAGGGAATGAATCAGCAGTTGACT GCTGTTGACCATCCTAAGTCACCTTCTTCCAAGTCTACTGCACCTATTCAATAA
AA sequence Show only first row Show all	>Lus10011063 pacid=23148650 polypeptide=Lus10011063 locus=Lus10011063.g ID=Lus10011063.BGIv1.0 annot-version=v1.0 MAKVKDGTGAIDRAVNVAAAEVESQVNTIKVSNVSLKAADQDLKEFFSFSGDIQYVEMQSDDDNDNKSQVGYVTFKDYQGAETAILLSGATIVDLAVTIT LDPYYKLPQSVLAAMENETKDPADPDSALRKAEDVVSSMLAKGYILGKDAVNKAKSFDEKHQLTSTGLAKVASFDKKIGLTDKISASTTVMGDKVREVDQ KYQVTEKTKSALAVAEQTVSTAGSKIMKNRYVFTSAAWVTGAFSRVAKAAEDVGQKAKEKAAEGEERKEVVDDDRSDKQKEEKKEEQKEKLGEGMNQQLT AVDHPKSPSSKSTAPIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	0	1
					Lus10003556 [exp]	2.0	0.9586
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	2.4	0.9546
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	3.5	0.9472
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	3.9	0.9479
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	4.2	0.9496
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	4.5	0.9318
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	4.6	0.9466
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	5.2	0.9343
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	5.7	0.9487
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	7.3	0.8805

Compare expression of checked genes

Lus10011063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.