Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 309 / 8e-90 AtRLP6 receptor like protein 6 (.1) AT3G05370 305 / 2e-89 AtRLP31 receptor like protein 31 (.1) AT1G47890 306 / 9e-89 AtRLP7 receptor like protein 7 (.1) AT3G11010 300 / 4e-87 AtRLP34 receptor like protein 34 (.1) AT5G25910 290 / 2e-84 AtRLP52 receptor like protein 52 (.1) AT5G27060 287 / 3e-82 AtRLP53 receptor like protein 53 (.1) AT1G71400 285 / 3e-82 AtRLP12 receptor like protein 12 (.1) AT3G28890 275 / 7e-80 AtRLP43 receptor like protein 43 (.1.2) AT3G05360 277 / 8e-80 AtRLP30 receptor like protein 30 (.1) AT3G05660 278 / 1e-79 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011039 [exp] 1033 / 0 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10024721 [exp] 449 / 5e-143 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 437 / 3e-138 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 431 / 5e-136 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10003387 [exp] 355 / 4e-106 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 355 / 5e-106 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10014905 [exp] 322 / 9e-100 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10042239 [exp] 311 / 8e-90 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 309 / 2e-89 AT1G47890 424 / 3e-131 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128400 [exp] 411 / 1e-126 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.012G028101 [exp] 335 / 3e-99 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G027600 [exp] 330 / 2e-96 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.001G437700 [exp] 324 / 2e-95 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G120600 [exp] 325 / 8e-95 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G389100 [exp] 322 / 2e-94 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G127000 [exp] 319 / 2e-93 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G025400 [exp] 318 / 3e-92 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G010445 [exp] 314 / 2e-91 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G027400 [exp] 312 / 2e-91 AT3G05660 347 / 3e-105 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10011064 pacid=23148623 polypeptide=Lus10011064 locus=Lus10011064.g ID=Lus10011064.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTGGTCAAGAACCTAACGCAGCTCAAAGTTCTCCATCTAGATTGGGTTGATCTCTCCCAAACCATCAACAACAGGTCTTGGTCAACCTTAC CTGATCTTCAGGAGCTCAGCCTGATCTATTGTAGAATCACCGGAGAGGCACTGCAGTATTCATCTCTTCTACACTTGAAATCCCTCACTCATTTGATACT CTCATATAATTACCTTGCGTGGAATGTTTCTGGGTATTCCTTCATCGAGTTTCCTCATCTCAAACATCTAGAGCTTAGCAACTGTAGGTTGTATGGAAGA TTTCTTAATAGCGTCTTCTTCATTCCCAATCTACAACATCTTGATGTTTCTTCCAATGATCAACTCTCTGGTACTCTGCCCCCCTTCCCTGCCGGCAACA ATTCACTACAATATATTAAACTTTCGGAAACATTATTTTATGGTGAAGTACCTGATTCCATAAGCTATTTAGTGTCATTGCAGCAACTCTATCTCTCCAA CTGCCACTTCCATGGAACATTCCCGAGTAGTATTTTCTTAAATCCAAATTTACAATCCATTAGTGTTTCCAACAACTCCCTTCTCACCGGTACTCTACCC GAATTCCCTACTGCCGGTAGCCCTCTTCAATTCATCCAACTTTCAGATACAAAATTTCAGGGGAAACTGCCTGATTCTATCAACAATTTAGTTTCGTTGA AGGAAGTGTATCTCTTAAACTGCATGTTTCATGGAGTTATCCCACCTTCGATTGACAGTCTAAGAGAACTACAACGCCTTCACCTTGCTGGAAACAACTT CAATGGTCCACTCCCATTATTATCTTCATCTCGCAATATGTTGGTTCTTAACCTGGCTTTCAATAATTTCAGTGGAAACATTCCTCTATCTTACGGCAGC GACCAGTTTCATGATCTTTGGAGGTTGTACTTGAACAACAACAACCTACAAGGACAAATTCCACCCTCTTTATTCAGTTTGCCATCCCTCCTCTCATTGG AACTCGGCTGGAACCAACTAGAAGGGCAGCTGGAAGAAATTCACAGTTACTCATTTCAACTAAGGAAAATAGACTTGCGTCATAACAAGCTTCGAGGCCA TCTTCCATTGTCATTCTTCAATATGACCGGCCTTAATTATCTATCGGTTGCTTTCAATGATTTCCAAGGAAGAATCAACCTTACGGAGACAGCCAACGGG TTGCTCTTCTATTTAGACCTCTCACACAATCACTTCCAAGTATATCTTACTCCTAGACGGTCAGGTTTGCAGGTCCTTGGTTTGAGTTCATGCAATATAG ACTCGTTGCCTGCAGATTTCTCAAACGCAAACCTTCAATATCTCGATCTTTCGCGAAATAGGATCAAGGGAAACATCTCTCCATCCATATGCAATATTCA AGGTTTAGAAATCCTAAATCTCTCCTCTAATAACTTCAGTGGTCCAATTCCACCATGCTTGGCTTCACTTCCCTATCTCCGTGTGTTAAGCTTAAGAAAT AACCAACTCAGTGGGATGATCCCTGAAGGTTTTACAGCAAACTGCACTCTGACTACTCTCGATGTGAATCAGAACCGCCTCCGAAACAAACTTCCTGGAT CTCTAAGCCTGTGTAAAGGTCTGCAAGTTATAGATGTTGGGAAAAATAACTTGAAGGGGAAGTTCCCAGTTTGGTTGGAGAATTTGCCTTTGTTGCGAGT TCTCATCTTGCACTCCAACCAATTCAGTGGTACTATTGGTTCCCGAAACAAGACTGGATTTCCTCTGCTCCAAATATTTGATGTCTCTTCTAACAATTTT GTCGGTGAGATGCCTTCAGGGTGGTTCGTAAGTTGGAAAGAAATGATGAAGCATGCTACTCCAACGGGTTTCGATATCGAAGTTATCGGTTCCAGTTACT CTTCAGGAACAGGTCTTGTCGCACCTGTCCTTGAACAAGAGTACCAAGATTCCATTACGGTCATTAATAAAGGAATTGTAACAGAGTACAGCAAGATCCT CACCATCCTCATCTTAATTGATGTATCCGACAACGGATTCACTGGCGAAATTCCTGAAGCAATATCTCGTCTCGAATCGCTACATCTCCTCAACCTCTCC AACAACCACTTTACAGGTCACATCCCAGGATCATTCGGACAACTAAGACAGCTAGAGTCACTAGACCTTTCGTCAAACAAGATTTCTGGCAACATCCCAA CACAACTTACAGAGCTCACATTTATGTCAAAACTGAACCTGTCAAAGAACTCACTCACGGGTGAGATACCTCGAGGACGGCAATTCGCAACTTTCGAAGT AGAATCTTATGAAGGCAATCCAGGATTGTGCGGCCTTCCATTGCCTAAACCATGCCACAATGTGAAGTCCCCGCCTATAAGTAGCAAACCAGATGATGCA AAAGCCAAAGGAGGGAATAGTGTGATTGACTGGGAGTACTATCGAGTTGGGATCGCGTGTGGAGGCGGGACAGGACTCATTGCTGGGTTCGTAGCAGCCT ATTTTGTGTTTGGAAATTTCTTCATCAAGACACGAAGAGTTCGTCGTAATGCTCAAAGTAAGAAGATTGCAGACGCTAAGCTTGCGAAAGATTTCCAAGC AGTTCTGAAAGAGTTTCAGAAGGCTCAACGTCTCTCAGCTGAGAGAGAAACCGCTTATTCTCCATTCGCTGCCAAGGCAAACCCTCCATCCAGACAAGAA GTCGTGCTGTTGGACAATGAAATTTCTTTCAACGAGGCAATCATCGAGGAAAGAGAGCAAGGGATACACGAAATTTCGCAGCAAATCGGTGAGGTGAACG AGATTTTTAAGGATCTTGCAGTCCTTGTCCACGAACAAGGAACCATGATCGACGATATCGGTTCGCACATCGATAATGCACATGCTGCAACTGCACAAGG GAAACAACATCTCGCCAAAGCCGCGAAAACCCAAAAATCGAATTCATCTCTGACCTGCTTACTCATGGTCATCTTCGCAATTGTGCTCCTCATCGTCATT GTAGTGCTTGCAGCCTAA
AA sequence Show only first row Show all	>Lus10011064 pacid=23148623 polypeptide=Lus10011064 locus=Lus10011064.g ID=Lus10011064.BGIv1.0 annot-version=v1.0 MEKLVKNLTQLKVLHLDWVDLSQTINNRSWSTLPDLQELSLIYCRITGEALQYSSLLHLKSLTHLILSYNYLAWNVSGYSFIEFPHLKHLELSNCRLYGR FLNSVFFIPNLQHLDVSSNDQLSGTLPPFPAGNNSLQYIKLSETLFYGEVPDSISYLVSLQQLYLSNCHFHGTFPSSIFLNPNLQSISVSNNSLLTGTLP EFPTAGSPLQFIQLSDTKFQGKLPDSINNLVSLKEVYLLNCMFHGVIPPSIDSLRELQRLHLAGNNFNGPLPLLSSSRNMLVLNLAFNNFSGNIPLSYGS DQFHDLWRLYLNNNNLQGQIPPSLFSLPSLLSLELGWNQLEGQLEEIHSYSFQLRKIDLRHNKLRGHLPLSFFNMTGLNYLSVAFNDFQGRINLTETANG LLFYLDLSHNHFQVYLTPRRSGLQVLGLSSCNIDSLPADFSNANLQYLDLSRNRIKGNISPSICNIQGLEILNLSSNNFSGPIPPCLASLPYLRVLSLRN NQLSGMIPEGFTANCTLTTLDVNQNRLRNKLPGSLSLCKGLQVIDVGKNNLKGKFPVWLENLPLLRVLILHSNQFSGTIGSRNKTGFPLLQIFDVSSNNF VGEMPSGWFVSWKEMMKHATPTGFDIEVIGSSYSSGTGLVAPVLEQEYQDSITVINKGIVTEYSKILTILILIDVSDNGFTGEIPEAISRLESLHLLNLS NNHFTGHIPGSFGQLRQLESLDLSSNKISGNIPTQLTELTFMSKLNLSKNSLTGEIPRGRQFATFEVESYEGNPGLCGLPLPKPCHNVKSPPISSKPDDA KAKGGNSVIDWEYYRVGIACGGGTGLIAGFVAAYFVFGNFFIKTRRVRRNAQSKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYSPFAAKANPPSRQE VVLLDNEISFNEAIIEEREQGIHEISQQIGEVNEIFKDLAVLVHEQGTMIDDIGSHIDNAHAATAQGKQHLAKAAKTQKSNSSLTCLLMVIFAIVLLIVI VVLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	0	1
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	2.4	0.9225
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	6.0	0.9124
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	6.5	0.9038
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	6.5	0.8950
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	8.0	0.8945
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	8.1	0.9003
					Lus10035642 [exp]	9.0	0.8936
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	10.0	0.9027
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	10.4	0.8876
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	10.6	0.8873

Compare expression of checked genes

Lus10011064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.