Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32330 335 / 1e-110 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 310 / 1e-100 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 295 / 4e-95 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 287 / 3e-92 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 224 / 3e-69 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 223 / 3e-68 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 193 / 1e-56 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G51910 181 / 6e-54 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT1G67970 177 / 7e-51 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT4G13980 175 / 2e-49 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000312 [exp] 687 / 0 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 433 / 5e-149 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 427 / 6e-147 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10040911 [exp] 264 / 3e-83 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10006618 [exp] 235 / 5e-73 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 229 / 1e-70 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 204 / 4e-61 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 202 / 2e-60 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 199 / 3e-59 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 421 / 7e-144 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 414 / 5e-141 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 274 / 8e-87 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.005G214800 [exp] 233 / 2e-72 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 232 / 2e-72 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 231 / 6e-72 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 227 / 7e-70 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.002G048200 [exp] 223 / 5e-69 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.014G141400 [exp] 207 / 1e-61 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.006G115700 [exp] 206 / 1e-60 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10011065 pacid=23148643 polypeptide=Lus10011065 locus=Lus10011065.g ID=Lus10011065.BGIv1.0 annot-version=v1.0 ATGGATGGAGCAGCAGTTGCCACCAAAGGAGGAGGCGGAGGAGGTAGCCCTGACGCTTCGACAAGTGGCGCCAGCGGAGCAGCAGCGCCGGTGCCGATTC CGTCGCAGTCGAACGCCCCGCCGCCGTTCCTCAGTAAGACGTACGACATGGTGGACGACCCAGCATGTGACGCCGTCGTGTCATGGAGTTCGACGAATAA CAGCTTCGTGGTTTGGAACCCTCCCGAGTTCGCTCGCGACCTCCTCCCCAAGTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTCAATACC TACGGATTCCGGAAAGTAGATCCGGACAGGTGGGAATTCGCGAACGAGGGGTTTCTGAGAGGGCAAAAGCATCTCCTCAAGGGTATAACCCGTCGGAAGC CACCTCAGCAGCAAGCTCAGCCATCAAACGGACAGACCTCATCATCGGTTGGCGCCGCTTGTGTCGAGGTTGGGAAATTCGGGCTCGAGGCGGAGGTCGA GAGGCTGAAGAGGGACAAGAACGTACTTATGCAGGAGCTTGTCCGGTTAAGGCAGCAGCAACAGGCCACCGACGGCCAGCTTCAGACGATGACTCAGCGA CTCCAAGGAATGGAGCAACGGCAACAGCAGATGATGTCGTTCTTGGCCAAGGCTATGCAGAGCCCCGGCTTTCTGGCTCAGTTCGTACAGCAGCAGAACG AGAATAGTCGGAGAATATCAGAGTCCAGCAAGAAACGGCGGCTCAAACAAGATGGAGTTACTGAGAACGAGAATGAGTCTTCCGGTGGTGTTTCTGATGG TCAGCAGATTGTTAAGTACCAGCCGTTGATGAACGAAGCGGCGAAATCCATGCTCCGGCAGATCATGAAACTCGACGGCTCCTCAAAATCTGAATCTTAC AACGACATCTTCGATGGCTTCTCTTCATCCGACGGTGGGAAATCTTCCGCCCACCGTGTATCGGGAGTAACTCTCCAGGAGGTGCCACCAACTTCAGGGC TGCCCGATCACCTGGCGTCAGCTTCGGTCCCCATCCCGACGACAGACGTTATGATGCCGGATCTTGATCAAATACCGGAAATGGTTCCAGAAAGCATACC CGATCTTCAGGGGGGAGGTTTCATGGAACCAGACACGGGGAAGGACTGCTTTCCCCCGATGATGAATGGTACGATCCCTCTAGATATCGATATCATATCT GCTGACCCCGACGATAGCTTTGATGTACTTCTGGATCATGATTTCTGCTGGGATATACTGCAAAGCCCCATCCCTGACGAGATTGATCCAAGCAAAGTTG CGAAACCAATGGAGAATATGGATCAGTTAACTCAACAAATGGGGCTTCTCTCACCGGATGCCGAGAAGCTGCTCTAG
AA sequence Show only first row Show all	>Lus10011065 pacid=23148643 polypeptide=Lus10011065 locus=Lus10011065.g ID=Lus10011065.BGIv1.0 annot-version=v1.0 MDGAAVATKGGGGGGSPDASTSGASGAAAPVPIPSQSNAPPPFLSKTYDMVDDPACDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNT YGFRKVDPDRWEFANEGFLRGQKHLLKGITRRKPPQQQAQPSNGQTSSSVGAACVEVGKFGLEAEVERLKRDKNVLMQELVRLRQQQQATDGQLQTMTQR LQGMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNENSRRISESSKKRRLKQDGVTENENESSGGVSDGQQIVKYQPLMNEAAKSMLRQIMKLDGSSKSESY NDIFDGFSSSDGGKSSAHRVSGVTLQEVPPTSGLPDHLASASVPIPTTDVMMPDLDQIPEMVPESIPDLQGGGFMEPDTGKDCFPPMMNGTIPLDIDIIS ADPDDSFDVLLDHDFCWDILQSPIPDEIDPSKVAKPMENMDQLTQQMGLLSPDAEKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10011065 [exp]	0	1
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	2.8	0.8701
AT5G13970			unknown protein		Lus10035116 [exp]	8.5	0.8090
AT1G24270			unknown protein		Lus10003131 [exp]	9.5	0.7842
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	11.0	0.8220
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	16.2	0.7207
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	17.8	0.8114
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	19.3	0.7991
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	21.6	0.8138
AT5G65490			unknown protein		Lus10012731 [exp]	23.5	0.7396
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	28.6	0.7277

Compare expression of checked genes

Lus10011065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.