Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46640 211 / 3e-65 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 211 / 2e-64 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 208 / 2e-64 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 191 / 1e-57 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 188 / 3e-56 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 175 / 2e-51 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 173 / 5e-51 AT-hook AT hook motif DNA-binding family protein (.1.2) AT5G62260 166 / 9e-48 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 162 / 3e-46 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 159 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000315 [exp] 527 / 0 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030962 [exp] 378 / 4e-130 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10040085 [exp] 377 / 4e-130 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 182 / 4e-54 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 181 / 5e-54 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10038903 [exp] 179 / 2e-53 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10004318 [exp] 179 / 3e-53 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030381 [exp] 178 / 7e-53 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10031696 [exp] 177 / 3e-52 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143500 [exp] 345 / 1e-117 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 331 / 4e-112 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 223 / 1e-69 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 204 / 8e-63 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 191 / 4e-58 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 187 / 7e-57 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G158200 [exp] 185 / 7e-56 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.005G256500 [exp] 186 / 3e-55 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G115800 [exp] 181 / 2e-54 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 180 / 8e-54 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10011067 pacid=23148670 polypeptide=Lus10011067 locus=Lus10011067.g ID=Lus10011067.BGIv1.0 annot-version=v1.0 ATGATCGTCCCATCTTCATCCGCCGCGGCGGCGGGGTTCCCGTTCAATTCCGTGATCCTGCGCGCACCTCCTCCTCCTCAGCATCCACCACCTCAATCGA AGCCACCTCCGCCCTCCGACGGATCCGGCGGCCACAACGCCCCCGGGTCATTCGACGAACCATCGCCGACGTCGTCCGGGATGAGGTTCAGCATCGAGCC AGCTAAGAAGAAGCGAGGGAGGCCGAGGAAGTACACTCCGGATGGCAACATTGCTCTCGGTTTGTCGACAACTCCGGTTTCTTCTTCAGGAGCTGCTGGT GGTGGTTCAGTAGGTCTTGATGAGTCCGGCGGCGGCGGTGGGACGACTCCTGGTTTGTCGTCGTCTGATAATCAAGCTAAACGGCATAGAGGGCGGCCGC CGAGCTCGGTGAAGAGGCAGCTTGATGCACTTGGAGGAGTTGGTGGGATAGGGTTTACTCCTCATGTGATCTTGGTGAATGCAGGAGAGGATATTGCTTC GAAGATTTATTCATTCTCCCAGCAAGGGCCAAGAACCATATGCATTCTCTCAGCAAACGGTGCCATATCTAACGTTACCCTTTGCCAACCTGCAATGACT GGTGGAGCAGTGACATACGAGGGGCGATATGAAATTATTTCTTTATCCGGTTCCTTCTGGCTTTCTGATAACAATGGTAATAAGAGTAGAACTGGTGGTC TCAGCATTTCACTGGCCGGGTCAGATGGCCGAGTTTTAGGTGGCGGAGTTGCTGGAATGTTAACTGCGGCATCACCAGTGCAGGTAATTGTGGGGAGCTT TGTTGCTGATACCAAAAAATCATCAGACCCAGAGGAATCCAAATCCGGGCCCTCGTCAAACCACATGTTGAATTTCGGTGCACCGATGTCTGAATCCAGC CCTCCTTTTCGAGCGGCATCCAGCGAATCCTCCGATGACCATGGTAGCAGTACTCCCTTGAACCGGCCTGGTGCTGGCATCTACGGCAACTCAGGCCAAC CACAACAACAACCCCTTCACAATATGCATATGTACCAAGTAATGGCTGGCCAACATCCCCAGTGA
AA sequence Show only first row Show all	>Lus10011067 pacid=23148670 polypeptide=Lus10011067 locus=Lus10011067.g ID=Lus10011067.BGIv1.0 annot-version=v1.0 MIVPSSSAAAAGFPFNSVILRAPPPPQHPPPQSKPPPPSDGSGGHNAPGSFDEPSPTSSGMRFSIEPAKKKRGRPRKYTPDGNIALGLSTTPVSSSGAAG GGSVGLDESGGGGGTTPGLSSSDNQAKRHRGRPPSSVKRQLDALGGVGGIGFTPHVILVNAGEDIASKIYSFSQQGPRTICILSANGAISNVTLCQPAMT GGAVTYEGRYEIISLSGSFWLSDNNGNKSRTGGLSISLAGSDGRVLGGGVAGMLTAASPVQVIVGSFVADTKKSSDPEESKSGPSSNHMLNFGAPMSESS PPFRAASSESSDDHGSSTPLNRPGAGIYGNSGQPQQQPLHNMHMYQVMAGQHPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	0	1
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	3.7	0.9125
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	5.5	0.9076
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	6.5	0.9151
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	9.4	0.9050
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	13.2	0.8997
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	15.2	0.8965
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	16.3	0.9027
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	17.6	0.8958
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	21.6	0.8846
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	22.1	0.8973

Compare expression of checked genes

Lus10011067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.