Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16970 88 / 6e-23 Plant self-incompatibility protein S1 family (.1) AT4G16195 87 / 3e-22 Plant self-incompatibility protein S1 family (.1) AT1G04645 85 / 4e-22 Plant self-incompatibility protein S1 family (.1) AT3G17080 83 / 4e-21 Plant self-incompatibility protein S1 family (.1) AT5G12060 77 / 1e-18 Plant self-incompatibility protein S1 family (.1) AT4G24973 74 / 9e-18 Plant self-incompatibility protein S1 family (.1) AT4G24974 74 / 1e-17 Plant self-incompatibility protein S1 family (.1) AT5G12070 73 / 4e-17 Plant self-incompatibility protein S1 family (.1) AT4G24975 73 / 4e-17 Plant self-incompatibility protein S1 family (.1) AT1G26795 71 / 4e-16 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011068 [exp] 181 / 1e-59 AT4G16195 103 / 5e-29 Plant self-incompatibility protein S1 family (.1) Lus10030965 [exp] 95 / 2e-25 AT3G16970 89 / 2e-23 Plant self-incompatibility protein S1 family (.1) Lus10030964 [exp] 93 / 5e-25 AT5G12060 102 / 2e-28 Plant self-incompatibility protein S1 family (.1) Lus10008107 [exp] 92 / 2e-24 AT4G16195 98 / 1e-26 Plant self-incompatibility protein S1 family (.1) Lus10000480 [exp] 89 / 1e-23 AT5G12060 84 / 7e-22 Plant self-incompatibility protein S1 family (.1) Lus10030565 [exp] 85 / 1e-21 AT3G16970 91 / 7e-24 Plant self-incompatibility protein S1 family (.1) Lus10013145 [exp] 78 / 4e-19 AT4G16195 88 / 8e-23 Plant self-incompatibility protein S1 family (.1) Lus10017929 [exp] 68 / 2e-15 AT4G16195 71 / 1e-16 Plant self-incompatibility protein S1 family (.1) Lus10011753 [exp] 70 / 4e-15 AT3G16970 90 / 1e-22 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148630 [exp] 87 / 2e-22 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 80 / 5e-20 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 71 / 3e-16 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.017G144361 [exp] 70 / 1e-15 AT4G24975 110 / 1e-31 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 68 / 4e-15 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 63 / 4e-13 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 58 / 3e-11 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.002G252500 [exp] 49 / 9e-08 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.016G066900 [exp] 47 / 2e-07 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 45 / 3e-06 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10011069 pacid=23148648 polypeptide=Lus10011069 locus=Lus10011069.g ID=Lus10011069.BGIv1.0 annot-version=v1.0 ATGGCGACAACGGCGATGGTGGCAGCAGTAGTGACAATGATGATGATGATGATGATTGTGTCAACAACTGACGGACAGCTCGTGAAAACGGACGTCACGA TATACAACTTTCTGGATGGCGGGCTGGACCTGTACGTGCACTGCAAGTCGAAAGATGACGACTTGGGGAAACACTTGTTGTCCTCGAAACAAAGATGGGG ATTTCGTTTCGGCCCCAACGTTTTCGAGAACACGCTGTTTTTCTGCTCGTTCGACTGGGCTGGCAACCCGGACGGGTTGAGCTACTTCGATATTTACAAG CAGAAGAGGGACGAGAAGCTTTGTGGAACAGACTGTATATGGCTTGTACATCAGACGGGAGTTTGCTTGTTTAAGCCAAGTTCCAATGGTTATTATACTA CTTGTTTCCCTTATAATAAAAAGCTAAGTTAA
AA sequence Show only first row Show all	>Lus10011069 pacid=23148648 polypeptide=Lus10011069 locus=Lus10011069.g ID=Lus10011069.BGIv1.0 annot-version=v1.0 MATTAMVAAVVTMMMMMMIVSTTDGQLVKTDVTIYNFLDGGLDLYVHCKSKDDDLGKHLLSSKQRWGFRFGPNVFENTLFFCSFDWAGNPDGLSYFDIYK QKRDEKLCGTDCIWLVHQTGVCLFKPSSNGYYTTCFPYNKKLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16195			Plant self-incompatibility pro...		Lus10011069 [exp]	0	1
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10012760 [exp]	5.3	0.9417
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	7.5	0.9369
					Lus10000178 [exp]	9.0	0.7569
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	10.5	0.9300
					Lus10021782 [exp]	12.2	0.9300
AT3G15280			unknown protein		Lus10009211 [exp]	12.4	0.6266
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	13.6	0.9300
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	14.9	0.9300
					Lus10007927 [exp]	16.1	0.9300
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	17.2	0.9300

Compare expression of checked genes

Lus10011069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.