Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44150 82 / 5e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038027 [exp] 182 / 5e-59 AT5G44150 123 / 2e-33 unknown protein Lus10039868 [exp] 185 / 2e-58 AT5G44150 201 / 2e-61 unknown protein Lus10005598 [exp] 162 / 9e-52 AT5G44150 124 / 2e-34 unknown protein Lus10018632 [exp] 167 / 3e-51 AT5G44150 202 / 6e-62 unknown protein Lus10014193 [exp] 115 / 5e-34 AT5G44150 50 / 2e-08 unknown protein Lus10035461 [exp] 0 / 1 AT5G44150 91 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017200 [exp] 50 / 7e-08 AT5G44150 137 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011074 pacid=23165735 polypeptide=Lus10011074 locus=Lus10011074.g ID=Lus10011074.BGIv1.0 annot-version=v1.0 ATGGACGCCAAAACACCAGCAAAGTCCAAGCGAGCTCACTCTCTACACCACAACAAGAAGCCACACCCGTCTCGTAAACCAACCGGTTTAGCTACTACAG GCGGTGGAGATGGTGGAATCGCAAGTAAATCGTCTGGAAAGCCGGTTAAGGACCGAAAACAAGCTGCCTCGCTCGCTTTGTCGTCGAATTCGGTTCGTTA CGAGGAAGAGTTTGATTCAGATTCGGCGGAAATGTCAGTTAAGACCTCCGATGTAACGTTGCCGAAGAGCAAATGTGCAGATTACCGCCATCTGCTTGCT GAAGCTCAATCTCAGTCGATTGCTAGTGGCTTCTTGGACAGCTTGTTTTCTCTAGACGATGTTATGCCTGATATGGAATATGAACATTCATTTCATTCAT TTATTGTGAAGGTAAATGATCAAATAGGATTGAACTGA
AA sequence Show only first row Show all	>Lus10011074 pacid=23165735 polypeptide=Lus10011074 locus=Lus10011074.g ID=Lus10011074.BGIv1.0 annot-version=v1.0 MDAKTPAKSKRAHSLHHNKKPHPSRKPTGLATTGGGDGGIASKSSGKPVKDRKQAASLALSSNSVRYEEEFDSDSAEMSVKTSDVTLPKSKCADYRHLLA EAQSQSIASGFLDSLFSLDDVMPDMEYEHSFHSFIVKVNDQIGLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44150			unknown protein		Lus10011074 [exp]	0	1
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	2.4	0.7256
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10020268 [exp]	24.5	0.6527
					Lus10006666 [exp]	25.1	0.6458
					Lus10014738 [exp]	37.0	0.6141
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	133.6	0.5810
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	138.6	0.5273
AT1G06260			Cysteine proteinases superfami...		Lus10041788 [exp]	271.1	0.5063

Compare expression of checked genes

Lus10011074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.